RNA id: TU223021


Basic Information

Item Value
RNA id TU223021
length 1290
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G196373
representative True

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 1967068 ~ 1968357 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTAATTATTCCCAGTTTAAATAATTAGTTTTTTGCTACTGAAATAACCAATGTGAAGTCTTGATTTTCTAATCTGTAAAAAACGGTTCTTAGCTTGTTTCGTCTGTATAGCCAGAATGTGGCTTGCTTTCTATTAATCAGCATTACTAATATCAACATAGAAACAATCATTATTGTGATTGATTTAAAGAAACTGGTTAAATTTAAGTATCTAAAATAAAAAAACAACAACACAGACACATTTATTAAGGTAATTATAAAAATTGTCCTTACAAATGTAAAAAGTGGCCCTGGGGCAAATATTGCCCCTGGAAAAGTTAATTTCTGACCCTGATATATATTTATATATAGGAAATGGAAATTCCACACAAAGAGGAGCTGTATCATTTCAGTTGAGTTAAGAAAGCATTTCTCTCAGGGTCCTGCTGTGTGATTTTTATAGCTCTGAATATGACATCAATCTGCTTTCAGATTTCTTCTTTAAAATGATTTTATACTGTATATACCCTCTGTGTTTTTATTGTGAAACATTCTTTGAACTTTAACTGTGTGGTCATCACAAGAAAAACATACCAGATAAGCTGGTTGAGATAACGAAAGTATAACCCACACTCATTTGGCTTGAGAACTTTGTCACAAGACAGGCAGAACTGGTTTAAACAAGAATCTTTACGCAAAGGTCTTAAAGAAACAAGTCTTCTTGACTATGTAGATCTTCATACAACACAAAGATGCTTTTTGTTGTAAACCAATATTATATTAAGTAATAGCTATAGGTATAAAGTTATATGAGAATAAATGTTCTAGAACCAGTTTAGTAAGTCTGGCTCCTTTAAGATTTAATTGCCTTTAATAATAATAATAATAATGACTGAAGCAAGTTTTACATTACATTTTACAATGAATAAAATGTGCTGAACATTACACAAACACATACCTTGTTATACATGCTGCAGAAGGCTTTTGGGATGTTATCTTTACAGGTGTAATGTAGTTCACGCTGTATTTGATGTTTTTAATGTGTCAAAAAGCTTTCACAAAATGGTCGTGCATCTTTGGATGACATTACATCATGTCTTTTTACATTTGTGCTACACACTAGTCAACCAAAAACCTACATTTCATTACAATGCAGATATGCAATAATTTATGTGTCATATTAAAAGTATTTGTTTTTAGATTCAGCCTCTTTGTGCAAAAGTCTGATTTTTGAATTTTGGTAATTGACCATCAACATTTTTTTGTTTATTTGATGTTTTTAACACATTTCAATAAAGAAAAACTAAATGTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223038 lncRNA downstream 637 1963727 ~ 1966431 (-) True G196390
TU223072 lncRNA downstream 4553 1962281 ~ 1962515 (-) True G196424
TU223053 lncRNA downstream 54620 1912178 ~ 1912448 (-) True G196405
TU222448 lncRNA downstream 247277 1644161 ~ 1719791 (-) True G195852
TU222452 lncRNA downstream 293348 1653960 ~ 1673720 (-) True G195856
TU223032 lncRNA upstream 80 1968437 ~ 1968699 (-) True G196384
TU223018 lncRNA upstream 19704 1988061 ~ 1989222 (-) True G196370
TU223075 lncRNA upstream 37431 2005788 ~ 2007561 (-) True G196427
TU223088 lncRNA upstream 142839 2111196 ~ 2111536 (-) True G196439
TU223090 lncRNA upstream 150246 2118603 ~ 2118818 (-) True G196441
CI01000046_01926303_01931836.mRNA mRNA downstream 34951 1926124 ~ 1932117 (-) True CI01000046_01926303_01931836
CI01000046_01814833_01858924.mRNA mRNA downstream 108058 1814804 ~ 1859010 (-) True CI01000046_01814833_01858924
CI01000046_01421301_01451701.mRNA mRNA downstream 515137 1420512 ~ 1451931 (-) True CI01000046_01421301_01451701
CI01000046_01236373_01241067.mRNA mRNA downstream 726001 1235992 ~ 1241067 (-) True CI01000046_01236373_01241067
CI01000046_01167146_01194022.mRNA mRNA downstream 773046 1167028 ~ 1194022 (-) True CI01000046_01167146_01194022
CI01000046_01970499_01979300.mRNA mRNA upstream 1634 1969991 ~ 1979300 (-) True CI01000046_01970499_01979300
CI01000046_02031809_02034289.mRNA mRNA upstream 63102 2031459 ~ 2034289 (-) True CI01000046_02031809_02034289
CI01000046_02171626_02174287.mRNA mRNA upstream 203097 2171454 ~ 2174302 (-) True CI01000046_02171626_02174287
CI01000046_02206354_02213335.mRNA mRNA upstream 237990 2206347 ~ 2213335 (-) True CI01000046_02206354_02213335
CI01000046_02248205_02252489.mRNA mRNA upstream 279606 2247963 ~ 2252489 (-) True CI01000046_02248205_02252489
TU221589 other downstream 1186775 777733 ~ 780293 (-) True CI01000046_00777923_00780186
TU221617 other downstream 1290940 670736 ~ 676128 (-) True G195098
TU221615 other downstream 1540742 407423 ~ 426326 (-) False G195097
TU221614 other downstream 1540742 407470 ~ 426326 (-) True G195097
TU221564 other downstream 1901157 63699 ~ 65911 (-) True G195066
TU223112 other upstream 199909 2168266 ~ 2168644 (-) True G196463
TU224633 other upstream 897902 2866259 ~ 2867794 (-) True CI01000046_02866255_02867695
TU225032 other upstream 1789266 3757623 ~ 3800101 (-) False G198265
TU225919 other upstream 4129002 6097359 ~ 6097674 (-) True G199054
TU225878 other upstream 4395821 6364178 ~ 6375406 (-) True G199014

Expression Profile