CI01000046_01988070_01995034 (UBFD1)


Basic Information

Item Value
gene id CI01000046_01988070_01995034
gene name UBFD1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 1986320 ~ 1995330 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_01988070_01995034.mRNA
GTATAAATGGATACCGAAATGTTGCTTCAAGATGACCTGATACATTTTCTTTGCATTGTTGTGCTAACTTGATACATTTTCATTTAGTCATTAAGGGCGACCACATAACCTCAGTTACCCAGTTATTCCAGCTAAGCTACAGCAGTGTGCTAGTTACTGTCACTGTTTTACTGCAATAACTTAACTTACCCGATTCACAAAGACAAACTTTAACACCCAGTCGCTGTTGTTGCTGCTGCATAGGTCACGCGCGATCTTTAAAACCAGCAGCGATTGACTGTATGTCTGTATGTGCATGAAATTATCTGTTCCGTTTACTTGTTTACATATTTCTTTCAAATGTTGTATATTGTGTAAGTGCTGAAAGATCACCGACCCCTCAAGGTAAGGTAGGGTAAGTTTACGCGTAGATAATCAGTAGATCTGTAAGCACTATTCACAGTGCGCATGTCAATCACGATTATTTGGAAATCATCAAATGTTAACAGGCTACGTCACATCTGGAATAGCCGTTACATTTTCTTCTGTTTATTTATTTATTTATTTATTTATTTTATCGCAACAAAGAATAGCGTACAACATATACAGACAAAAGACAGTTATATTCTAAAAGGGTTAAAATACATGAAATTATAAAAATGATAGTATTACACCATAAAAGAGTCATACAAGCATCTAAATATTAAGAGTTCTTCGAAGAATTCAAATATAGATTAACCTCAATCTTTAAATAAAAAAATGCTGGGTACATTACTTACTTACAAACTGTATCCAGTTACTGATTCCAGATTGCATGACAGAAATTGTAGTTAGTAATAGGCTACTCATTTTAGGTAACTACTTTTTGATTACTTTTGACCTTAACTTGTTTACAATATATTCCATTCTTTGTTATCCACAACATGAAGTGCATTAAATACTACATTATGTCAGGGTTTCCCAGACTGGGGTTCATAATGGACCTGCAGGGGTTTGTGAGTTTAATGAAAAGCTATTAAGTAATTAAGTAAAATAAAAATTTAACCTTGACCATTGACCTTCTGAATGTATATAAGCAGTAGATTTTTATAGAAAGGAAAATGTAAAATATAACAAAGAAGTAGAATCAATGAATTATAAATAATTTACTGCCATTGTGAGAATAGCATGTAATCAATAGAAAAGTAACTGTAGTCTGATTAATAAAATGTAATATAATCTAATTACAAGTAGGCTACTTAATTATTGGAATCTGATTACATAATCCAGATTAAATGTAATCAGTCACTACCAAACACTAATATATATATATATATTAGTAAATAATTGGGTAATTGTTTCTTTAAAGTGATGACTGACGAAAGGAGAAATTGGGTAAAATACTGTCATTAAAATTTGTAAGTTTATAGTTTACTGGATAACAGTTATGAATAATTAAAAAAAAAACTTCAACTTTGTTTGGGCATAACAAACTTTTTTTGTCGAATATGCTAGAATTCCATGTCACTAAATTTATGATTTAAAAAAATCCTTACTTTCAGTAGGCCTACACCAGGGGCTATTTGCATAAACTTAGCCACTATGTTAAGACGGCGTCTTAAGAATTAGTTTGATCAACTAGCAGTTAGATGACAAACTTTTAAGACTAGTGCAGTTTATGCAACCGGCCACAGATTTTAAAATCGCAAAGTCACTACGGGAAGCTGCAGAGCTCATTCACTGACAGCACGCTCTTTCCCAGAAGCCTTTCCTCATATTGTACACAATCATCATGGCGGCGCAGGATGGAAGTGAGGTAGTAGGAATGGAGGCTGAGGTCACGCAGAAGGTACCAGAAGTGTTGTGTGAAGCTGCTGGACAAGGAGATGCAGCCGGGACTGAACAAGCATCTCCTACCGATGGTGAAAGCACGTCAGCTCAGACTGCTGCTGTCAGCAACGGAGAGGAAAGTGACGAGGGGAAAGAGATGGTGGAAGTGAAAATCATTTGGAACAAAAACAAATATGATCTTAAAATTCCTTTAGACAGCACTGGTGCTAAGCTGAAAGAGAAGATTCACACTCTCACTGGTCTTCCACCCGCTATGCAGAAAGTGATGTACAAAGGATTGCTACCAGAGGACAAGACGCTTCGAGAAATCAAAGTTACAAATGGTGCAAAGATTATGGTGGTTGGATCAACAATAAATGATGTACTAGCTGTAAATACACCGAAAGAAGTTATTCAGCAAGAGGTTAAAGCTGAGGAGAACAAAAAGGAGCCATTGTGCAGGCAAAAGCAACATAGAAAAGTTTTGGACAAAGGAAAACCAGACGATGTTATGCCATCAATAAAAGGAGCTAAGGAGCGTCTGCCAACAGTGCCTTTATCAGGAATGTACAACAAATCTGGCGGAAAAGTACGACTCACTTTCAAACTGGAACAGGATCAGTTATGGATTGGAACGAAAGAAAGAACAGAAAAAATCCCGATGGGTTCCATCAAAAATGTTGTGACTGAGCCAATAGAGGGTCACGAGGACTATCACATGATGGCATTTCAGCTGGGTCCGACAGAAGCCTCACAATATTGGGTCTACTGGGTGCCTGCACAGTTTGTTGATGCAATCAAAGACACAGTTCTCGGAAAATGGCAGTATTTTTAACGTGCCTATAGACACTGAAGAATTGGGATTCAGAGCAAAAGATTGAAAACATTAACTGGAGCCAACACAATAATCTGAAGAACTGATTTTTCTGAAGTATATCCAGAGCAAACCGAAGGATTGCTGTTGGACAAAATATTTTGGGGGTTTTAAGTGCACTAAGTGTCAGCATCCCGTTTTTCAAACTGTTTCACCACTCTTTTTTTTTTTTTTTTTTTTTTTTAAAGCAATCCCAAGCATAAACAGAAAATTGTACAGAACTTGCATATACATTTCTCGTAGTTATTCTGAAAGAA

Function

symbol description
ubfd1 Orthologous to human UBFD1 (ubiquitin family domain containing 1).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_01988070_01995034.mRNA True 2919 mRNA 0.36 7 1986320 1995330

Neighbor

gene id symbol gene type direction distance location
CI01000046_01963803_01965901 NA coding upstream 19268 1963555 ~ 1968371 (+)
CI01000046_01933932_01935589 NA coding upstream 48498 1932890 ~ 1937822 (+)
CI01000046_01903950_01922429 KDM8 coding upstream 63881 1902090 ~ 1922439 (+)
CI01000046_01865451_01881353 NA coding upstream 104951 1865451 ~ 1881369 (+)
CI01000046_01540075_01668012 HS3ST4 coding upstream 318308 1539494 ~ 1668012 (+)
CI01000046_02006028_02024639 NA coding downstream 10698 2006028 ~ 2024940 (+)
CI01000046_02027256_02031337 RMI2 coding downstream 31824 2027154 ~ 2031451 (+)
CI01000046_02037519_02037782 SNN, CP075, SNN.S, SNN.L coding downstream 42189 2037421 ~ 2039716 (+)
CI01000046_02066859_02072868 NA coding downstream 71529 2066859 ~ 2073014 (+)
CI01000046_02123765_02158243 AXIN1 coding downstream 128435 2123765 ~ 2158243 (+)
G196051 NA non-coding upstream 23788 1962246 ~ 1962532 (+)
G196050 NA non-coding upstream 24561 1961219 ~ 1961759 (+)
G196038 NA non-coding upstream 115340 1870698 ~ 1870980 (+)
G195978 NA non-coding downstream 1793 1997123 ~ 1999094 (+)
G195981 NA non-coding downstream 60740 2056070 ~ 2057016 (+)
G196076 NA non-coding downstream 82792 2078122 ~ 2078480 (+)
G196080 NA non-coding downstream 87355 2082685 ~ 2083646 (+)
G195003 NA other upstream 824630 1161157 ~ 1161690 (+)
G194721 NA other upstream 1525975 458008 ~ 460345 (+)
CI01000046_02451052_02454565 MAFK other downstream 444587 2442395 ~ 2457280 (+)
G196936 NA other downstream 1191665 3186995 ~ 3194271 (+)
CI01000046_03943890_03945302 ATP5J2 other downstream 1948498 3943794 ~ 3945500 (+)
G197055 NA other downstream 2154093 4149423 ~ 4149780 (+)
G197121 NA other downstream 2375681 4371011 ~ 4371430 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00018168 ubfd1,LOC106601113 coding CM030135.1 CM030135.1 3099730 ~ 3103442 (-)