CI01000046_03624314_03633087 (WIPI2)


Basic Information

Item Value
gene id CI01000046_03624314_03633087
gene name WIPI2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 3624314 ~ 3633201 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_03624314_03633087.mRNA
ATGAACCTGGCCAGTCAGAGCGGAGAGGCCGGCTGCAGCCAGCTGCTCTTCGCCAACTTTAATCAGGATAACACATCCCTAGCTGTTGGTACCAAGTCTGGGTACAAGTTTTTCTCCTTGTCATCAGTAGACAAATTGGAACAGATCTATGAATGTACTGACACAGAAGATGTGTGCATCGTGGAGAGATTGTTCTCCAGCAGCCTTGTCGCTATTGTCAGCCTTAAGGCACCTAGGAAGCTGAAGGTCTGTCACTTCAAGAAAGGGACGGAGATATGCAACTACAGCTACTCCAACACTATACTGGCTGTAAAACTAAACAGGCAGAGATTGATAGTGTGTTTAGAGGAGTCACTCTATATCCACAACATTAGGGATATGAAAGTACTACATACCATTCGAGAGACCCCTCCGAATCCTTCCGGACTGTGTGCCCTGTCAATCAGTAATGACAACTGCTACTTGGCCTATCCGGGAAGTGCAACAATTGGGGAAGTACAAGTTTTTGATACGGTCAACCTGAGGGCAGCTAACATGATACCTGCCCATGATAGCCCACTAGCAGCACTGGCGTTTGATGCAAGCGGCACTAAATTGGCCACAGCCTCTGAAAAGGGCACCGTGATCCGTGTGTTCTGCATTCCAGAGGGCCAAAAGCTCTTTGAGTTCAGAAGGGGAGTAAAGAGATGTGTGAGCATCTGTTCCCTTGCCTTCAGTATGGAGGGACTCTATCTGTCTGCCTCAAGCAACACAGAGACGGTTCATATTTTTAAGCTGGAGACCCAGAGAGAGAAGCCTCAGGAGGAGCCCACTACTTGGACAGGATACTTTGGGAAAGTATTGATGGCCTCCACAACATATCTGCCTGCACACGTAACAGAGATGTTCACTCAAGGAAGGGCATTTGCTACAGTCAGACTGCCCTTTTCAGGTCACAAGAACATCTGCGCTCTGGCCATAATCCAGAAGATTCCACGCCTGCTGGTGGCTGCAGCTGATGGCTATCTTTACCTGTACAATCTGGACCCACAGGAGGGAGGAGAGTGCACACTAATGAAACAGCATAAGTTAGATGGAAGTGCAGAGCCAGCGAATGAAATTCTTGAACAGACAGCTCACGACCGGCCACTTGTGGCACAGACCTACAGTGCTGCTGTTGCCAAAGGTTACACTGAGGATCAGGGGGCAGTAGGGGGTGCTGGTTTGGAGGACGACATGAACACCCTGCACCTGGACGAAGAGAACGAGCAGCCTCCGTTAATCCTGGAAACAGACTGAGCCGCTGCCAGTCGCGCCCTGGGCGGGAAGATGGAACTGACTGAGTGACATTGCGGAGGGGGGTTTCCTCCTCTGGTGCTGCTATGGGCATGTGTGACCCGATAGAGAAAGGGA

Function

symbol description
wipi2 Predicted to enable phosphatidylinositol-3,5-bisphosphate binding activity and phosphatidylinositol-3-phosphate binding activity. Predicted to be involved in several processes, including autophagy of mitochondrion; autophagy of nucleus; and protein localization to phagophore assembly site. Predicted to act upstream of or within autophagosome assembly. Predicted to be located in phagophore assembly site. Predicted to be active in cytosol and phagophore assembly site membrane. Predicted to be extrinsic component of membrane. Orthologous to human WIPI2 (WD repeat domain, phosphoinositide interacting 2).

GO:

id name namespace
GO:0006497 protein lipidation biological_process

KEGG:

id description
K17908 WIPI1_2, ATG18; autophagy-related protein 18

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_03624314_03633087.mRNA True 1392 mRNA 0.50 12 3624314 3633201

Neighbor

gene id symbol gene type direction distance location
CI01000046_03596032_03605678 AP5Z1 coding upstream 18468 3595468 ~ 3605846 (+)
CI01000046_03572743_03591418 FOXK1 coding upstream 32861 3570743 ~ 3591453 (+)
CI01000046_03556534_03559710 CYP3C1, CYP3C2, CYP3C3, CYP3C4 coding upstream 64477 3556206 ~ 3559837 (+)
CI01000046_03544999_03551574 CYP3C4 coding upstream 72417 3544999 ~ 3551897 (+)
CI01000046_03511698_03542614 SDK1, SDK1A coding upstream 81470 3511405 ~ 3542844 (+)
CI01000046_03680288_03699097 SMURF1 coding downstream 47087 3680288 ~ 3699097 (+)
CI01000046_03712603_03713730 NA coding downstream 79271 3712472 ~ 3714191 (+)
CI01000046_03721265_03754551 RNF216 coding downstream 87481 3720682 ~ 3754781 (+)
CI01000046_03794654_03799486 ACTG1, ACTL9, ACTB2, ACTB1, ACTB, ACTBB coding downstream 160519 3793720 ~ 3800026 (+)
CI01000046_03887074_03887701 NA coding downstream 253709 3886910 ~ 3888039 (+)
G196975 NA non-coding upstream 60766 3562497 ~ 3563548 (+)
CI01000046_03205894_03253907 NA non-coding upstream 384978 3205592 ~ 3254330 (+)
CI01000046_03138487_03139142 NA non-coding upstream 483435 3138487 ~ 3140879 (+)
G196784 NA non-coding upstream 540194 3082933 ~ 3084120 (+)
G196809 NA non-coding upstream 580832 3043191 ~ 3043482 (+)
G196857 NA non-coding downstream 5708 3638909 ~ 3641270 (+)
G196846 NA non-coding downstream 10982 3644183 ~ 3644698 (+)
G196994 NA non-coding downstream 138641 3771842 ~ 3772078 (+)
G196887 NA non-coding downstream 257819 3891020 ~ 3891841 (+)
G197024 NA non-coding downstream 281383 3914584 ~ 3914837 (+)
G196936 NA other upstream 430043 3186995 ~ 3194271 (+)
CI01000046_02451052_02454565 MAFK other upstream 1167034 2442395 ~ 2457280 (+)
CI01000046_01865451_01881353 NA other upstream 1665166 1865451 ~ 1881369 (+)
CI01000046_01540075_01668012 HS3ST4 other upstream 2060977 1539494 ~ 1668012 (+)
G195003 NA other upstream 2462624 1161157 ~ 1161690 (+)
CI01000046_03943890_03945302 ATP5J2 other downstream 310627 3943794 ~ 3945500 (+)
G197055 NA other downstream 516222 4149423 ~ 4149780 (+)
G197121 NA other downstream 737810 4371011 ~ 4371430 (+)
G196869 NA other downstream 782329 4415530 ~ 4421687 (+)
G197352 NA other downstream 1641181 5259318 ~ 5276453 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location