CI01000046_03680288_03699097 (SMURF1)


Basic Information

Item Value
gene id CI01000046_03680288_03699097
gene name SMURF1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 3680288 ~ 3699097 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_03680288_03699097.mRNA
TATTATGTGCCAAGAATCTGGCAAAGAAAGACTTCTTCCGGTTGCCTGATCCTTTCGCCAAAGTGGTGGTGGATGGCTCGGGTCAATGCCACTCTACAGACACGGTCAAAAGCACACTGGACCCCAAGTGGAATCAGCATTACGACCTGTATATTGGGAAGACCGATTCCATCACCATTAGTGTATGGAACCATAAGAAGATCCATAAGAAACAGGGGGCGGGTTTCTTAGGCTGTGTGCGGCTCCTGTCCAATGCCATCAGCAGACTAAAAGACACAGGCTACCAGCGTTTAGACTTGTGCAAGTTGAACCCATCTGACAGTGATGCTGTCCGTGGACAAATCGTTGTGAGCCTGCAAACCAGAGACAGAATTGGCAGTGGAGGGCCTGTGGTCGACTGTAGAGGACTGGTAGAGAATGAAGGGCCCGTTTTTGAGGACTCGGGGCCCGGACGGCCTCTCAGCTGCTTCATGGAGGAGCCCATGCCATACACAGATCCCACAGGGGCCGCTGGCGGAGGAAACTGCCGTGCACTTGAGTCACCCAATCAGGAGCAGCGACTCCAAGCACAACGGATCAGAAATCAAGATTCCCGAGGGCACGCACACACCCCCCAAAACCGACCACACGGACACCAGTCCCCTGACCTCCCTGAGGGCTACGAGCAAAGGACCACTGTGCAGGGCCAAGTCTATTTTCTGCACACACAGACTGGCGTGAGCACCTGGCATGATCCTAGAATACCCCGGGATTTGAACAGCGTGAGTTGTGAGGAGCTGGGCCCTCTGCCGCCCGGCTGGGAGATCAGGAGCACTGTGTCAGGACGAATTTATTTTGTCGACCACAATAATAGAACCACGCAATTCACCGACCCCAGGTTACACCACATCATGAGCCAGCACTCTCAGGTGAAGGAGTCGAGCCAGGCTCTGCCCGTACAGATGGAGGTTGGAATGGAGGAGGGTGACGGGGAGTTACCGGTGCGCTACGAGAGAGATCTGGTACAAAAACTTAAAGTTCTCCGGCATGAGCTCTCCCTGCAGCAGCCTCAGGCCGGCCACTGCCGCATAGAAGTGTCCCGTGAGGAGATCTTTGAGGAGTCTTATAGGCAGATCATGAAGATGAGACCCAAAGACCTGAAGAAGCGGCTGATGGTGAAGTTTAGAGGAGAGGAGGGGCTGGATTACGGTGGTGTTGCTAGGGAGTGGTTATATCTTCTCTGTCATGAGATGCTAAATCCATACTACGGCCTGTTTCAGTACTCAACTGATAACATCTACACACTACAGATCAACCCAGATTCATCCATCAACCCTGACCACTTGTCTTACTTCCACTTTGTTGGGCGGATTATGGGTCTGGCTGTTTTCCATGGGCACTACATCAATGGAGGCTTCACTTTGCCTTTCTACAAGCAGCTCCTGGGGAAGCCAATCCAGCTTTGTGACCTTGAGACTGTGGACCCAGAGCTGCACAAGAGCCTCGTCTGGATCCTAGAGAATGACATCACATCTGTTTTGGACCACACTTTCTGCGTAGAACATAATGCTTTCGGCAAATTCCTCCAACATGAGCTGAAACCAAATGGCAAGAACATCCCAGTCACAGAGGAGAACAAGAAAGAATATGTGAGGCTGTATGTCAACTGGAGGTTCATGCGAGGCATTGAGGCCCAGTTCCTCGCCTTGCAGAAAGGCTTCAACGAACTCATTCCACAGCATCTGCTCAAGCCTTTTGACAACAAGGAACTTGAGCTGATCATCGGTGGTTTGGGGAAGATCGATCTGAACGACTGGAAGGCCAACACGCGGCTTAAGCACTGTGTGGCTGACAGTAACATAGTGAAGTGGTTCTGGCAGGCAGTTGAATCGTTTGACGAAGAGAGGAGAGGCAGACTGCTACAGTTCGTCACAGGCTCCACACGCGTTCCTCTACAAGGCTTCAAAGCACTGCAAGGTTCTGCAGGACCAAGACTCTTCACTATTCATTTAATTGATGCCAACACAGACAACCTGCCCAAAGCCCACACATGCTTCAACCGAATCGACATCCCGCCTTACGAGTCATACGAGAAGCTCTACGAGAAGCTCCTAACGGCCGTGGAGGAGACGTGTGGCTTTGCAGTGGAGTGA

Function

symbol description
smurf1 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in several processes, including negative regulation of BMP signaling pathway; protein polyubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within ubiquitin-dependent protein catabolic process. Predicted to be active in cytoplasm. Is expressed in alar plate midbrain region; axis; midbrain; neural plate; and notochord. Orthologous to human SMURF1 (SMAD specific E3 ubiquitin protein ligase 1).

GO:

id name namespace
GO:0032801 receptor catabolic process biological_process

KEGG:

id description
K04678 SMURF; E3 ubiquitin ligase SMURF1/2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_03680288_03699097.mRNA True 2132 mRNA 0.52 17 3680288 3699097

Neighbor

gene id symbol gene type direction distance location
CI01000046_03624314_03633087 WIPI2 coding upstream 47087 3624314 ~ 3633201 (+)
CI01000046_03596032_03605678 AP5Z1 coding upstream 74442 3595468 ~ 3605846 (+)
CI01000046_03572743_03591418 FOXK1 coding upstream 88835 3570743 ~ 3591453 (+)
CI01000046_03556534_03559710 CYP3C1, CYP3C2, CYP3C3, CYP3C4 coding upstream 120451 3556206 ~ 3559837 (+)
CI01000046_03544999_03551574 CYP3C4 coding upstream 128391 3544999 ~ 3551897 (+)
CI01000046_03712603_03713730 NA coding downstream 13375 3712472 ~ 3714191 (+)
CI01000046_03721265_03754551 RNF216 coding downstream 21585 3720682 ~ 3754781 (+)
CI01000046_03794654_03799486 ACTG1, ACTL9, ACTB2, ACTB1, ACTB, ACTBB coding downstream 94623 3793720 ~ 3800026 (+)
CI01000046_03887074_03887701 NA coding downstream 187813 3886910 ~ 3888039 (+)
CI01000046_03943890_03945302 ATP5J2 coding downstream 244697 3943794 ~ 3945500 (+)
G196846 NA non-coding upstream 35590 3644183 ~ 3644698 (+)
G196885 NA non-coding upstream 37725 3622712 ~ 3642563 (+)
G196857 NA non-coding upstream 39018 3638909 ~ 3641270 (+)
G196975 NA non-coding upstream 116740 3562497 ~ 3563548 (+)
CI01000046_03205894_03253907 NA non-coding upstream 440952 3205592 ~ 3254330 (+)
G196994 NA non-coding downstream 72745 3771842 ~ 3772078 (+)
G196887 NA non-coding downstream 191923 3891020 ~ 3891841 (+)
G197024 NA non-coding downstream 215487 3914584 ~ 3914837 (+)
G197039 NA non-coding downstream 251488 3950585 ~ 3950828 (+)
G196871 NA non-coding downstream 426901 4125998 ~ 4126444 (+)
G196936 NA other upstream 486017 3186995 ~ 3194271 (+)
CI01000046_02451052_02454565 MAFK other upstream 1223008 2442395 ~ 2457280 (+)
CI01000046_01865451_01881353 NA other upstream 1721140 1865451 ~ 1881369 (+)
CI01000046_01540075_01668012 HS3ST4 other upstream 2116951 1539494 ~ 1668012 (+)
G195003 NA other upstream 2518598 1161157 ~ 1161690 (+)
G197055 NA other downstream 450326 4149423 ~ 4149780 (+)
G197121 NA other downstream 671914 4371011 ~ 4371430 (+)
G196869 NA other downstream 716433 4415530 ~ 4421687 (+)
G197352 NA other downstream 1575285 5259318 ~ 5276453 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026670 smurf1 coding NC_007114.7 CM002887.2 40690212 ~ 40768548 (-)
bowfin (Amia calva) AMCG00018531 smurf1,LOC107720062,LOC107591759,LOC107703417,LOC107581717 coding CM030135.1 CM030135.1 13783853 ~ 13832385 (-)