XLOC_009401 (mrpl44)


Basic Information

Item Value
gene id XLOC_009401
gene name mrpl44
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 35214546 ~ 35224481 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018489
ATCATGTTCAACCGCCTTCCTAGGATGCATATATGGGTGTCAAGAGGGCTTaaggattgagCTCTGAACAGCCGAACTTTGATTACCATGCTGAGGTGGAAGCTTTCGGAGTCCGTCTGCAGGAGAGTTTCTCTGTGGATTTGCTGAAGACGGCGTTTGTGAATTCCTGTTACCTACGCTCTGAGGTGGAGAGGAGGAAAGCGCTGGGTTTGGATTCAGAGTCCGCCATCCTTAACCTGAAAGACAACACTGAGCTGCGTGATCACGGTCAACACTTCACTACGGGTTTCCTGAGTGACTGGTGCAAAAACAGCTTTCCTAATCTTCCTGATGAGGGCGTGGCAGCCATTGCAGGTCACCTGACCGGGTCAGAGGTCATATGTCACGTGGCACGAAACCTGGCTGTGGAGGAGCTGACGATGAGTGCAGAGTTTCCTGTGCCGGACCACATCCTGCAGGGAACGTTCTTCGCTGTAATTGGTGCTCTGGAGCAGAGCAGCGGGCCTGTGCGAGCCGGCCTTTTCATCAGGGATTTCCTCGTAACTCAGCTGATAGGCAAAGATCTGTTTGACATGTGGAAAGTGGTGGATCCCATGGGGCTCCTGGTGGAAGAACTGACCCGTAAAGGTGTAGCTCTACCTGAGCCCCGTCTCATCCGCTCTGCTGGAGCCAGCACTGTCCTCCCTTTGTATTTTGTTGGCCTTTACAGTGACCGTAAGCTGTTGGCTCAGGGTCCAGGCGAGACTGTCCTCATAGCTGAAGAAGAAGCGGCTCGAGTGGCTTTGAGGAAACTCTACGGCTTCACAGAGAACCGCAGGCCATTTGACTTCACTGCACCCCGAGACCAGCTTCAGAAGCCCAGCACACAGGCTCTCACCAGCGGATGAATGACACTGTATCATGACTTAAAGAGCATATTCCAGTGGGACACGTTTTGGAGAGCTAAAGTACATGCATTCATCTGCTGTATGTTGGGTGTTGCTGTCAGGTCACTAGAGGCCTGCGTAACATGCCTGAGAGACTCTTAATGTACCACTGACTGACAGTAAAAACATCATATACATCTGCCTTAAGAGCATTCATCTATTATGCAGATGCAGATTCTTTATATTTCATCTGTTGTTGATTAACAACTGTTGTATATAAATGTTACGCTTTGGCTGATAATAAAGGTTCTGAACCGAA
>TCONS_00018490
GGAGACGGCGCTGTGGACAGTTTGCCCCCGGGTTTCAGTCGCTCGTTCGCGGAATGCGCAGTGTGTGAGGTCGCAGCTGTCATGGCGGCGTGCAGGGCGCTCGTGAGTCGTGCCGTTTTGCCTTTGCATTATCATCATGTGTGCAGAGGAGTGATGCTCACCCAAATCAGAGAGAAGAAGAGATGGATGAAGGCCTACATGTTCGTCATGCGCAAGAAGTTGAAGCTGGAGGGACCTCCAGCTCCAAAGCCACGCTCTGAACAGCCGAACTTTGATTACCATGCTGAGGTGGAAGCTTTCGGAGTCCGTCTGCAGGAGAGTTTCTCTGTGGATTTGCTGAAGACGGCGTTTGTGAATTCCTGTTACCTACGCTCTGAGGTGGAGAGGAGGAAAGCGCTGGGTTTGGATTCAGAGTCCGCCATCCTTAACCTGAAAGACAACACTGAGCTGCGTGATCACGGTCAACACTTCACTACGGGTTTCCTGAGTGACTGGTGCAAAAACAGCTTTCCTAATCTTCCTGATGAGGGCGTGGCAGCCATTGCAGGTCACCTGACCGGGTCAGAGGTCATATGTCACGTGGCACGAAACCTGGCTGTGGAGGAGCTGACGATGAGTGCAGAGTTTCCTGTGCCGGACCACATCCTGCAGGGAACGTTCTTCGCTGTAATTGGTGCTCTGGAGCAGAGCAGCGGGCCTGTGCGAGCCGGCCTTTTCATCAGGGATTTCCTCGTAACTCAGCTGATAGGCAAAGATCTGTTTGACATGTGGAAAGTGGTGGATCCCATGGGGCTCCTGGTGGAAGAACTGACCCGTAAAGGTGTAGCTCTACCTGAGCCCCGTCTCATCCGCTCTGCTGGAGCCAGCACTGTCCTCCCTTTGTATTTTGTTGGCCTTTACAGTGACCGTAAGCTGTTGGCTCAGGGTCCAGGCGAGACTGTCCTCATAGCTGAAGAAGAAGCGGCTCGAGTGGCTTTGAGGAAACTCTACGGCTTCACAGAGAACCGCAGGCCATTTGACTTCACTGCACCCCGAGACCAGCTTCAGAAGCCCAGCACACAGGCTCTCACCAGCGGATGAATGACACTGTATCATGACTTAAAGAGCATATTCCAGTGGGACACGTTTTGGAGAGCTAAAGTACATGCATTCATCTGCTGTATGTTGGGTGTTGCTGTCAGGTCACTAGAGGCCTGCGTAACATGCCTGAGAGACTCTTAATGTACCACTGACTGACAGTAAAAACATCATATACATCTGCCTTAAGAGCATTCATCTATTATGCAGATGCAGATTCTTTATATTTCATCTGTTGTTGATTAACAACTGTTGTATATAAATGTTACGCTTTGGCTGATAATAAAGGTTCTGAACCGAA

Function

symbol description
mrpl44 Predicted to enable double-stranded RNA binding activity and ribonuclease III activity. Predicted to be involved in RNA processing and regulation of gene expression. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 16. Orthologous to human MRPL44 (mitochondrial ribosomal protein L44).

GO:

id name namespace
GO:0030422 production of siRNA involved in RNA interference biological_process
GO:0006396 RNA processing biological_process
GO:0031053 primary miRNA processing biological_process
GO:0031054 pre-miRNA processing biological_process
GO:0005634 nucleus cellular_component
GO:0004525 ribonuclease III activity molecular_function
GO:0003725 double-stranded RNA binding molecular_function

KEGG:

id description
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-050913-59 Predicted to enable double-stranded RNA binding activity and ribonuclease III activity. Predicted to be involved in RNA processing and regulation of gene expression. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 16. Orthologous to human MRPL44 (mitochondrial ribosomal protein L44).

Ensembl:

ensembl_id ENSDARG00000094277

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018489 False 1185 mRNA 0.50 5 35214546 35224173
TCONS_00018490 True 1378 mRNA 0.51 5 35214546 35224481

Neighbor

gene id symbol gene type direction distance location
XLOC_009400 agfg1a coding downstream 2084 35156414 ~ 35212462 (-)
XLOC_009399 si:ch211-272b8.7 coding downstream 79628 35130621 ~ 35134918 (-)
XLOC_009398 bloc1s3 coding downstream 87914 35036368 ~ 35126632 (-)
XLOC_009397 arhgef28b coding downstream 183023 35004547 ~ 35031523 (-)
XLOC_009396 dhx16 coding downstream 279762 34899645 ~ 34934784 (-)
XLOC_009402 mff coding upstream 2192 35226673 ~ 35252548 (-)
XLOC_009403 mecom coding upstream 148426 35372907 ~ 35410860 (-)
XLOC_009404 CR848683.2 coding upstream 189985 35414466 ~ 35661368 (-)
XLOC_009405 CR848683.1 coding upstream 216259 35440740 ~ 35468800 (-)
XLOC_009406 NA coding upstream 389753 35614234 ~ 35675985 (-)
XLOC_009389 NA non-coding downstream 607140 34602522 ~ 34607406 (-)
XLOC_009383 FP017158.1 non-coding downstream 935011 34279421 ~ 34279535 (-)
XLOC_009376 CR855379.2 non-coding downstream 1326879 33868661 ~ 33887667 (-)
XLOC_009377 NA non-coding downstream 1337215 33869579 ~ 33877331 (-)
XLOC_009371 NA non-coding downstream 1532868 33665924 ~ 33681678 (-)
XLOC_009407 NA non-coding upstream 537200 35761681 ~ 35886373 (-)
XLOC_009408 CR854907.1 non-coding upstream 555559 35780040 ~ 35780805 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000095_02721425_02727921 MRPL44 coding CI01000095 null 2721112 ~ 2728180 (-)