XLOC_009406


Basic Information

Item Value
gene id XLOC_009406
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 35614234 ~ 35675985 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019214
GCCAGATTCATTCATTAACGCGCATGCGCAATGCCTTGGTAAACATGATTCAGATTAACGAGGAAACCTCGATGGCAGCGCATATCATTTTTAAACTAAGTTAATACAATTTGTTGGTGTAATCGTGGAAATTAGTTGTATGGTAATATTCTTAGAATAGCCTAATGAGTGTAAAGTTATGTCACTGACTATTCCACTCTTTGACATTTCTGCAAAGCGCGAGACAACTTGAGGGCGCTTCAGCAGAGCTCATGGCCTACTGTTCCCACGCTTCAATTGAAGAAAGACAGAGACGAACAAAGATCTCAGGGGGTTGGatcaacatgagggcCAGAAATATGATCGAGTGCAATTACTACAAATGTGGCCTGACCTCAGAGCTGGAGGTTGCGAGGTCAGGGGTCAGAAGGCACTTCCTGGCCCCCCGTGTGTGTTTTTGAGCAGGGATGACTCTAGAAGATGATATCTGAACACATGTGTGGAGGCGTCAGAAGTGATCATAtcggcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtctgtgtgtgtctgtgtgtgtctgtgtgtccgtTTTTGGTTTGAAGTCTCCTCAGATCAGTCAGTGGCGATGGATGTGATTGTGTTGCTGCATGACctgcacacaaataaac

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019214 True 672 lncRNA 0.45 4 35614234 35675985

Neighbor

gene id symbol gene type direction distance location
XLOC_009405 CR848683.1 coding downstream 145434 35440740 ~ 35468800 (-)
XLOC_009403 mecom coding downstream 203374 35372907 ~ 35410860 (-)
XLOC_009402 mff coding downstream 361686 35226673 ~ 35252548 (-)
XLOC_009401 mrpl44 coding downstream 389753 35214546 ~ 35224481 (-)
XLOC_009400 agfg1a coding downstream 401772 35156414 ~ 35212462 (-)
XLOC_009407 NA coding upstream 85696 35761681 ~ 35886373 (-)
XLOC_009408 CR854907.1 coding upstream 104055 35780040 ~ 35780805 (-)
XLOC_009409 irs1 coding upstream 212564 35888549 ~ 35930070 (-)
XLOC_009410 col4a4 coding upstream 275903 35951888 ~ 36055401 (-)
XLOC_009411 ostn coding upstream 552850 36228835 ~ 36249087 (-)
XLOC_009389 NA non-coding downstream 1006828 34602522 ~ 34607406 (-)
XLOC_009383 FP017158.1 non-coding downstream 1334699 34279421 ~ 34279535 (-)
XLOC_009376 CR855379.2 non-coding downstream 1726567 33868661 ~ 33887667 (-)
XLOC_009377 NA non-coding downstream 1736903 33869579 ~ 33877331 (-)
XLOC_009415 NA non-coding upstream 745606 36421591 ~ 36437846 (-)
XLOC_009416 NA non-coding upstream 824221 36500206 ~ 36503189 (-)
XLOC_009419 NA non-coding upstream 1108494 36784479 ~ 36784773 (-)

Expression


Co-expression Network