XLOC_009416


Basic Information

Item Value
gene id XLOC_009416
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 36500206 ~ 36503189 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019218
GCATTACAAGCATCTTGAGTTACATAATAGTATTGCTTTTCTAAGAAATGAGTAAAGTACCGCATTACTTTTACAAAATtagtaatatttgagttactttttagtttaatttacttttaaaaaataaatagctgaatTAAAATGACACACGCAATGAGAGAaagcaggaacagacagaaatgaaAATGGCAGGGCCTTGTATTTCTGCGATGGAAAATTTTCATAGATTTGAACaaatggaagaaaaggaaaagaaattATCTGAATAGACAATCATTTTGCTTTTTAATATGACAAAAAACGAATCAAACTCATtgctttaaaattgtattattctgtatatacagttagtaattgtacaatttttattttattttattttttttaagaaaaaagaagattgttgttaattgcagagctcctctattttaaaaaagaaggagttctgaaagagatcaagcctcagccaggtcagaaaaagtaacgcTAAAATTAACTAAGAAgcgtaactagttacttttttggggagtaactcaatattgtaatgcatgactttttaaagttactttatccaacattttgtgtgtgtgtgtgtgtgtggggggggggggtgtgtaTGTCAGTAGTTAAGACAAACACACTgaagtatttattaaaattaatcaaaGGTCACTAAagtatagctgaaataaaatgtaaattagatagaaaaaaagtttttaaaaagtatgaaactAATGACAAACACCAAAAGTAATTATCATTATGAGAACATTATGATGTTAATAAttcatttgagaaaaaaaaaaacatttactgtacAACTGTTCACAAATATCCCACTTTGAGTGATATGTTCAGCAGGTATGAccaaatttgaattttaaaatcaaatcaaatgaaaaCTATTTAATCTTGATATTATTTTCCACATTGatcaaacacgcacacactagCCCAGGTGTTGAgaacaattgtatttatttaaaatatgtctcATTCAACAAATATGGCAGGTCGTCtcataaaatatatacagcaacAGGCATAATCTTTGAAACTTCAGTAGAAATCACACAAATATCCATTAGTAATGATGAGAATCATGAGGAAGTCAATATTAGCAATGATCCTGACTGCATATTCTCATGTACTGAGAGTTTAGTATATTACACTGAGCAAGTTATGTATATGATTTATTATCCAGTGACATCTGACGTTAATACAAAGTAAAACACTACAGATAatatcaaaaaagaaaatataaatgttCAATCTCTTTCATTCCTTACAAACTGTTCATAAAACTCTTTTAAGTATTGTTAACAAGAATACCTTACATAAGGTAAAAGAAAAAAGCGCTGATGTCAGAACCGCCTGTCATTGAAAGGAAATACAATGCAATCTCCTGTGATTTTTCATCTTTTAAAGGCGGCTGCGATTGACCTTCAGAAAGAAAACCTACATCTGCATTTTTTCTGCTCCTTTCTCACATCAACTTTAAAGTGAAAATGGTAACTGAAATTAGAATCTGTGAGCTGAAGGTTATCTTGGCTTGTGGAGTttcttaaatgaaaaaatattagtGCGCAAAGATTGATCGCAGTTAATCACATCTAAAGAAAAGTTGGCTTTGGCATTAGatatgtgtatgtatgcgtgtgtgtgtatgtgttttatataCACTAAAAATATTGCTACCTTACATTACATTTAAGTTGAATTTAAATTTTCTAGTCATTTCAACTTACATccatcaaactgactaaaaatattaagttaagctttgtaaatgtttaacaATGTTGTTGAAGTCGgagtaatttattaaaattagttcaagcaaaaaaaaaaaaaaatgtcttgaattTTTGTTCCTaaagtttttacatattttacacacatATTAATACAAAACTATcttacagcaattcgtaactttttttatttagtggctaaatcgttTGACTTTGTACAATTTCATTCCTACAATTTAGCATGATTTGCCAGCGCTATCTTACAGCAAttggtaactttttgatttagttgctaatttgtatgaactcataatatctcattcatacaattaagtatgatttgctcatcccccgatgatggttggatttagaggTGGAATTTGGTGCCACGCTTTCTTTATATAATTGTACGTTTccatatgactgaactcatatATTTGTGCAAATTAGCCACATTGACAAAACGTTAAGTAGTTACgcttcctcatgagatcaggctggatttgcTTATCTCCCAATAATGGTTAGATTTAGTGGTGGCACTTGGTGCCACACCTTCTTTGTAAAATTGTAAGTATTCGTACAACTTAAATTATGAATTTgagcgaattagccactaaactaaccaAACGTAAAATAGCTACATTTCCTTGAGAGATCAGTCTGGATTTGCTCATCGTCCATTGACGATTGAATTTAGGGGCGGGATTTGGTGCCATGCCCTCTTTTTA

Function

GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0009581 detection of external stimulus biological_process
GO:0009582 detection of abiotic stimulus biological_process
GO:0009583 detection of light stimulus biological_process
GO:0009314 response to radiation biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0104004 cellular response to environmental stimulus biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0009416 response to light stimulus biological_process
GO:0003008 system process biological_process
GO:0051606 detection of stimulus biological_process
GO:0071214 cellular response to abiotic stimulus biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0071478 cellular response to radiation biological_process
GO:0071482 cellular response to light stimulus biological_process
GO:0031226 intrinsic component of plasma membrane cellular_component
GO:0042995 cell projection cellular_component
GO:0001750 photoreceptor outer segment cellular_component
GO:0043005 neuron projection cellular_component
GO:0044441 obsolete ciliary part cellular_component
GO:0044459 obsolete plasma membrane part cellular_component
GO:0044463 obsolete cell projection part cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0120038 obsolete plasma membrane bounded cell projection part cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0071944 cell periphery cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0097730 non-motile cilium cellular_component
GO:0005929 cilium cellular_component
GO:0097731 9+0 non-motile cilium cellular_component
GO:0097733 photoreceptor cell cilium cellular_component
GO:0044297 cell body cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0008020 G protein-coupled photoreceptor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019218 True 2488 lncRNA 0.31 2 36500206 36503189

Neighbor

gene id symbol gene type direction distance location
XLOC_009415 NA coding downstream 62360 36421591 ~ 36437846 (-)
XLOC_009414 si:dkey-23k10.3 coding downstream 130463 36358144 ~ 36369743 (-)
XLOC_009413 si:dkey-23k10.5 coding downstream 142317 36349009 ~ 36357889 (-)
XLOC_009412 si:dkey-23k10.2 coding downstream 152311 36329368 ~ 36347895 (-)
XLOC_009411 ostn coding downstream 251119 36228835 ~ 36249087 (-)
XLOC_009417 si:dkey-262k9.4 coding upstream 2825 36506014 ~ 36533437 (-)
XLOC_009418 nphs1 coding upstream 50634 36553823 ~ 36939655 (-)
XLOC_009419 NA coding upstream 281290 36784479 ~ 36784773 (-)
XLOC_009420 AL953844.1 coding upstream 371062 36874251 ~ 36874366 (-)
XLOC_009421 zmp:0000001114 coding upstream 518829 37022018 ~ 37104165 (-)
XLOC_009407 NA non-coding downstream 613833 35761681 ~ 35886373 (-)
XLOC_009408 CR854907.1 non-coding downstream 719401 35780040 ~ 35780805 (-)
XLOC_009406 NA non-coding downstream 824221 35614234 ~ 35675985 (-)
XLOC_009404 CR848683.2 non-coding downstream 838838 35414466 ~ 35661368 (-)
XLOC_009422 CR848749.2 non-coding upstream 756165 37259354 ~ 37264265 (-)
XLOC_009432 CR848836.1 non-coding upstream 1224645 37727834 ~ 37729166 (-)
XLOC_009444 CR944667.3 non-coding upstream 1373527 37876716 ~ 37880887 (-)

Expression


Co-expression Network