XLOC_009413 (si:dkey-23k10.5)


Basic Information

Item Value
gene id XLOC_009413
gene name si:dkey-23k10.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 36349009 ~ 36357889 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018505
ATGAGGATGGTGTTGCTTGGACCtcactattccagcataagtttgaCAGGAGAAACACTTTTGGGAAGGCATGTTTTGGACAAGGAAATCAAAGTAAATGTAGAAGAAATTGGGGAAGTAGCTGGAAGGAAGCTCACTGTGGTTTGCACACCAGGTTTTGAAAAAGATTACCTCACTGGAGAAAGACTTGAGGATTCTAAACGTAATATCTGGAGAAGTGTGACAGAAAGCTCCTCTGGAGGAACACATGCTTTCATTTTAGTCCAGAGTGTCGACTCTTCTTTTGCAGAAGAAGAGAAAGGTGCACTTGAGAAGATCATGGAGCCTCTTGGTGAAAGAGTCTGGAATCACACACTGGTTCTGTTCGCTGTTGGAGATGAACCGGAAGAAACTCCAATTGAGGTGTTCATTGCAAGTGAAGGTGACATGCTCCAGTGGCTCATTGAGAAGTGTGGGAACAGGTATCATGTCCTCAACTATAAGAACTGTGGTGATGGATCTCAGGTCACAGAACTCCTGAAGAAGATCGAGGAGATGGTGGGAGAAAACAGAGGACATCATTATGAAATTGACAGAGAGACTTTAGAGAAGATTAAAGGAACAATCGCTGTACCTATTAAAAAAGCACATAGTTTAGATGATCCCGTAAACTTTGGTGATAAATCCAGTCTTTCCTCGGGGATAGGTTCAGCATTTGTATCACAGAGATCCCAAGAAGCACCGGGAGAGTCAAGTTCAAAAATGAGTTCTGGAGTGCAGTCTCTTGGGTCAATCCCTGAGTTTGATTGAGAACTTAATTCAGATTAAGAAACACATATAGTTTAACATTGTGTAGTAACGTGCGGTAAAAGCAACAATCATTTCATATACAGAAACAATAATTAATACCAATTTTGAAAGTGGAATCTGCATGAGTATTATGCCAGAGTGCGTGTATGGTCTCATGATGTACATTTAAAGCAACATAGCATAGATAGAGaccttttcagaaatgctagatgaaacaccagtgtggatgtggattggTTTGGTGAAGTTAttcccttgagcaaggcaccgAATGGCCAACTGCTCCCTGGGCAGCCCACTGCTCTTGGTGTGTGTTCACAGGTGTAAGTAATTTTTGTATAAAAAGCGTCTGCTAAACacataaatgtaaatgtcttaaaactaaaacacatcaGTGTAAATAGGGCCTGAGTTCAGATCCCTGTAGCTTTTTTTTCAGTGGCAAACAAATAGGCTGAGCTTGATTACCAGCAATAATTATGGGCAATGTAAAACATTACAGTTTAATATGGAATAGGCAAGCAGCAAACATTCACAGGTACAGATTAAAAAATAGCCAACGGTGAGGAGTATCAGCCAGAACAAAATAAGGCTTTGCaatgagagtgtgtttgtgcacTGTTTGAAAAGTCCAGGAATTACAATGACAATTTATTGTacatacaatattttaattatagaaatatacttgtacatacatttttcaatttgtatatttttaatctCATTATCTATGTTTATGTCATGTCACTGCCATTCTGTAGCACTGTAGAAGCTTTAGTCACAAAAACTAATTTCTCACATGTAAACATatctggcaataaagctctttctgattctgaaaaatcaacacaatctcatggcaattcgtaactttttgatttagtggctaattagtatgaattcatatgatctaatttgtacaatttagtacgatttgcttatcccctaatgacggttgggtttaggggtggggttaggtgccacacctcctttttaaaatcgtacaattccGCACGactgaattcgtacaaattagccaataaactgtaaaatacttacgttttctcgtgagatcagactggaAAAATAGGGAACAAAAAGTCAATACCCACTGAGCAAGTAAGTGTGACTCCTCTAGTGGTGAGTGAGAATAGAATTATAGGGTAGAATCAAGGCTTTGTCTGTGAATATCTGTGGTATGTGCTctttatgtatgtacagtatctTTAGTTGCCAGagctatataaaatgtaattatttgttgtactgttTAATATTTACAGGTTAATTTTATGGTGGTCTCACTTCAGCTTGCTTTAAATGTGTAATAATGACATCATGCTGGGGTTTGAGTAGGTTATTTTAAAAACCATgcaatattactgtatttcaaaaaGTAATGTTTAGAAATTACTGAATTGTTTATTAACTGATTTAGATATACAGCGAACTGTCATCACATCATTgagaagaaaaacatttttgatcaGTTCTCTTTATTTAATCCGCTTATATAACTTTTAATAGCTGTTAAGTTGTTAAAAATAGTAGGTGAGCTTATTTAAAAGGTTAATCAACAACTTGGGTACAAAAATGATGAAGAAATTGTAATATGTGATTTGTGGTGGCACATCTGACATCTCACTTTTAATGTATCTTCCTTTTAAACCTgtcttaatacatttttatactgtttttaatcatttaaattctgtgtcatattttgtaaagtgtttttaattacCATTGTATatgaaatgtactatataaataaaccgaGAGGCTGCTTGTAGTCATAAGTTgttttaaccctaaccccaacccccagtgaTGTCACTATAGAGAAAGTGCCGAAAGAAGTCTCTGAACTTGCCCCTCCTTGCTAGAGCTCCGCTGTGCCCATGTGGCTTTGCAGTGAGTACCActtgaatatatgtatatattcaatTATcagcctgaattattagccaccgcggtttatttttttccccaccaattgtttaacagagagcagaattttttcaacacatttctaaacataatagttttaataactcatctctgatttattttatctttgccatgatgacagtaaataatattttactagatatttttcaagacactgctatacagcttaaagtgacatttaaaggcataattaggttaactaggcaggttagggtaattaggcaggttattgtataacaatggtttgttttgttctgtagactatcagaaaaaaaaagattagtttaaaggggctaataattttgaccttacaatgttttttttaaataaaaactgtttttattctagccaaaataaaacaaataagactttctccagaagaaataaaatattatctgacatactgtgaaaatttccttgccctgttaaacatcatttgggaaatattaaaataaataaaattcaaaggggagctaataattctgactgcaactgtaatTTTACAAAGATTTTGAATGTTTCAAAATCAAGTACATTTAGTCCACATTAATCTAGTGAATTGCAGagtgttttttgttgtgttttatttcattaaaatagctgtgtttatttttccatattaaattataaatagattttttttatctcattAATGATGCTTATTTGCCATGGGCATAGTTaagatttattctttttttttggtctttttaaatttttattcctAAATaagtaatacagtttttttttttattggaatgtCACATAATTCAAAACCAGGGTTTTcttttaaagcaaataattctcatttttaaaaatatttttttgctaaACCTCAAAAAGATGGAAGATGAAAGAAAGTAGAGTTAATGTATTTATCTTGTATTTACAGCTGCAAAAAAAGTAATACCAAGAAGACTGCTTTTTAATTCAGTATTAGATTATGTGTAACTTATTAATTAAAAGGAAGTACAGATATCAAATGAAAACCACCCTGTAGGTAGCAGCAGGACTgtcttaatttattatttataaatgaaaaaaaaaaaagaaccaagcATGTGAGAATGGATCAGTGAATAATTGCATTATTGATTGCATTTATAAACGACATTCTTGTAATATGAGAA
>TCONS_00018506
AGCAAAAGGTGACATTTCATAAACACTGATAGTGATTTGAGATTCATCTGAGCAGTTCTGTCTTTTGAAATAACTCTTCAAAAAAGTGGACCTTACTAAAATAGTTTAGACCTTTATTCTGTGTATTATATGTCTTGTCAACATCTTTGAACGACTTCATTTTAATGTACTATATGAGTACAAGTTTTAACTTTGATaacttttttgcacatttttttttatataattcattTATAGTAATTGTATAGTTTTTTCATTGTGGATCTGAGATGCAGTTAATGCATGTATTTCTTTTGGAAACAACACACCTAACTGCTCTTTGACCGCTTGTAAAAATATATGGCTcaataaaaaaacagctataaGGAAATACAGTTCTGTTCTTTTCTGAAAACAAGTTAGACTGCGCAACACAACGACGTCTTTGAAAAGTGCTCAACTGTATATTACTACagttaatgcattattttataaaacagaACCTCACATTTAACCATTCAAGAGGACTTTCAGCATCATAATGAATCCAAGCAGTCCATATGATTCCTCAGAGCTGAGGATTCTTCTTTTGGGTCCAAAGAATGATGAGAAAAGTTTAGCTGGAAACACTATCCTGGGCAAAACGGAGTTTGACTCAAAGCAGACTTTGCAGTGTGTGGAGAAACACAGTGAAATCGCTGGAACAAAGATCACTGTGGTTGATACTCCAGGCTGGTGGGGAAATTTACCATTTGAAGAAAACCCTGAACTGTACAAACAAGAAATTGTCCTGAGTGTGAATAAATGTCCTCCAGGACCTCATGTCCTGCTCCTGGTCTTAAATGTGGACACACcgtttaaacaaaatgaaaaagacaTCCTATGTGATAATATGAGATGTTTTGGTGAGGAAGTGTGGAGGCACACCATAGTGTTGTTCACCTGTGCAGATCTTACGGAAGATAAGACCACTCGACTGTTGGAGAATGAAAACCTCCAGTGGCTCATTGAGAAATGTGGAAACCGATATCATGAGCTTAATATTAAGCACTGGGATGACGGATATCAGGTCACACAACTGATTAAGAAAATGCAGGAAATGGTGGACAGGAACAGAGGCAACCATTATAAAATGAACAGAGATACTTTACAACGTGTGGAGGAGAAGAGGAGAGAACAGCAAAAGAGAGCAGTGGAAAGAAGGATCAAGCATATGCAGCTGAAAGACAAGACAACTACTGATAATGAACATCACCTCTCAGAGCTGAAGATTGTGCTGCTGGGATATAACAGTTCTGGCAAGAGTTCAGCAGGAAACACCATCCTGGGCAAACCTGCATTTGACTGCAAAAGATTGCGTAGATCTGTGATACAAGAAGGAGATGTTTCAGGAAGACACATCACTGTGGTGAACACTCCAGGCCGAAAAAGAAACTACCACTCGAAATACACCCCCAGACTGTATAAAGATGAGATTGTGTTGAGTCCATCTCACTGTCCTCCAGGACCTCACGTCTTTCTGCTGGTCATAAGAGTGGACGTTTCTTTCACTGAAGTTTACAGAAAGGCAGTAGAGGAGCATGTGGCCCTTCTTGGTCTCACAATCTGGGATCGCATGATTGTTCTCTTTACTTTTGGTGACTGGTTGAGAGACACAAGCATTGAGGTGTTTATCGAGAGTGAAGGAGAAGCTCTTCAGTGGATAATAAACAAATGTGGGAACAGATATCATGTTTTCAACAACAAGAACACAGATGATGGCAGTCAAGTGGCAGAGCTGTTAGACAAGATACAAGAGATGATTGCAGGAAATGAAGAACCCTGTTTTAtgataaatgaaacaaatttacaagAAGTAAAAGAAAGGAGGATTAAAATAGAAGAAAGAGCAAAACAACTGCAAGATGAAGtgcaaaatataaaagaattcagATCTTCAGTAGCAGATGCTGCAGAACTTTCTGAAATGAGGATGGTGTTGCTTGGACCtcactattccagcataagtttgaCAGGAGAAACACTTTTGGGAAGGCATGTTTTGGACAAGGAAATCAAAGTAAATGTAGAAGAAATTGGGGAAGTAGCTGGAAGGAAGCTCACTGTGGTTTGCACACCAGGTTTTGAAAAAGATTACCTCACTGGAGAAAGACTTGAGGATTCTAAACGTAATATCTGGAGAAGTGTGACAGAAAGCTCCTCTGGAGGAACACATGCTTTCATTTTAGTCCAGAGTGTCGACTCTTCTTTTGCAGAAGAAGAGAAAGGTGCACTTGAGAAGATCATGGAGCCTCTTGGTGAAAGAGTCTGGAATCACACACTGGTTCTGTTCGCTGTTGGAGATGAACCGGAAGAAACTCCAATTGAGGTGTTCATTGCAAGTGAAGGTGACATGCTCCAGTGGCTCATTGAGAAGTGTGGGAACAGGTATCATGTCCTCAACTATAAGAACTGTGGTGATGGATCTCAGGTCACAGAACTCCTGAAGAAGATCGAGGAGATGGTGGGAGAAAACAGAGGACATCATTATGAAATTGACAGAGAGACTTTAGAGAAGATTAAAGGAACAATCGCTGTACCTATTAAAAAAGCACATAGTTTAGATGATCCCGTAAACTTTGGTGATAAATCCAGTCTTTCCTCGGGGATAGGTTCAGCATTTGTATCACAGAGATCCCAAGAAGCACCGGGAGAGTCAAGTTCAAAAATGAGTTCTGGAGTGCAGTCTCTTGGGTCAATCCCTGAGTTTGATTGAGAACTTAATTCAGATTAAGAAACACATATAGTTTAACATTGTGTAGTAACGTGCGGTAAAAGCAACAATCATTTCATATACAGAAACAATAATTAATACCAATTTTGAAAGTGGAATCTGCATGAGTATTATGCCAGAGTGCGTGTATGGTCTCATGATGTACATTTAAAGCAACATAGCATAGATAGAGaccttttcagaaatgctagatgaaacaccagtgtggatgtggattggTTTGGTGAAGTTAttcccttgagcaaggcaccgAATGGCCAACTGCTCCCTGGGCAGCCCACTGCTCTTGGTGTGTGTTCACAGGTGTAAGTAATTTTTGTATAAAAAGCGTCTGCTAAACacataaatgtaaatgtcttaaaactaaaacacatcaGTGTAAATAGGGCCTGAGTTCAGATCCCTGTAGCTTTTTTTTCAGTGGCAAACAAATAGGCTGAGCTTGATTACCAGCAATAATTATGGGCAATGTAAAACATTACAGTTTAATATGGAATAGGCAAGCAGCAAACATTCACAGGTACAGATTAAAAAATAGCCAACGGTGAGGAGTATCAGCCAGAACAAAATAAGGCTTTGCaatgagagtgtgtttgtgcacTGTTTGAAAAGTCCAGGAATTACAATGACAATTTATTGTacatacaatattttaattatagaaatatacttgtacatacatttttcaatttgtatatttttaatctCATTATCTATGTTTATGTCATGTCACTGCCATTCTGTAGCACTGTAGAAGCTTTAGTCACAAAAACTAATTTCTCACATGTAAACATatctggcaataaagctctttctgattctgaaaaatcaacacaatctcatggcaattcgtaactttttgatttagtggct
>TCONS_00018507
ATGAGATGTTTTGGTGAGGAAGTGTGGAGGCACACCATAGTGTTGTTCACCTGTGCAGATCTTACGGAAGATAAGACCACTCGACTGTTGGAGAATGAAAACCTCCAGTGGCTCATTGAGAAATGTGGAAACCGATATCATGAGCTTAATATTAAGCACTGGGATGACGGATATCAGGTCACACAACTGATTAAGAAAATGCAGGAAATGGTGGACAGGAACAGAGGCAACCATTATAAAATGAACAGAGATACTTTACAACGTGTGGAGGAGAAGAGGAGAGAACAGCAAAAGAGAGCAGTGGAAAGAAGGATCAAGCATATGCAGCTGAAAGACAAGACAACTACTGATAATGAACATCACCTCTCAGAGCTGAAGATTGTGCTGCTGGGATATAACAGTTCTGGCAAGAGTTCAGCAGGAAACACCATCCTGGGCAAACCTGCATTTGACTGCAAAAGATTGCGTAGATCTGTGATACAAGAAGGAGATGTTTCAGGAAGACACATCACTGTGGTGAACACTCCAGGCCGAAAAAGAAACTACCACTCGAAATACACCCCCAGACTGTATAAAGATGAGATTGTGTTGAGTCCATCTCACTGTCCTCCAGGACCTCACGTCTTTCTGCTGGTCATAAGAGTGGACGTTTCTTTCACTGAAGTTTACAGAAAGGCAGTAGAGGAGCATGTGGCCCTTCTTGGTCTCACAATCTGGGATCGCATGATTGTTCTCTTTACTTTTGGTGACTGGTTGAGAGACACAAGCATTGAGGTGTTTATCGAGAGTGAAGGAGAAGCTCTTCAGTGGATAATAAACAAATGTGGGAACAGATATCATGTTTTCAACAACAAGAACACAGATGATGGCAGTCAAGTGGCAGAGCTGTTAGACAAGATACAAGAGATGATTGCAGGAAATGAAGAACCCTGTTTTAtgataaatgaaacaaatttacaagAAGTAAAAGAAAGGAGGATTAAAATAGAAGAAAGAGCAAAACAACTGCAAGATGAAGtgcaaaatataaaagaattcagATCTTCAGTAGCAGGTGAGTAG

Function

symbol description
si:dkey-23k10.5 Predicted to enable GTP binding activity.

GO:

id name namespace
GO:0005525 GTP binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4787 Predicted to enable GTP binding activity.

Ensembl:

ensembl_id ENSDARG00000011581

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018505 False 3890 mRNA 0.34 2 36349009 36352983
TCONS_00018506 False 3625 mRNA 0.39 5 36351219 36357889
TCONS_00018507 True 1062 mRNA 0.42 2 36353080 36356264

Neighbor

gene id symbol gene type direction distance location
XLOC_009412 si:dkey-23k10.2 coding downstream 1114 36329368 ~ 36347895 (-)
XLOC_009411 ostn coding downstream 99922 36228835 ~ 36249087 (-)
XLOC_009410 col4a4 coding downstream 293608 35951888 ~ 36055401 (-)
XLOC_009409 irs1 coding downstream 418939 35888549 ~ 35930070 (-)
XLOC_009407 NA coding downstream 462636 35761681 ~ 35886373 (-)
XLOC_009414 si:dkey-23k10.3 coding upstream 255 36358144 ~ 36369743 (-)
XLOC_009415 NA coding upstream 63702 36421591 ~ 36437846 (-)
XLOC_009416 NA coding upstream 142317 36500206 ~ 36503189 (-)
XLOC_009417 si:dkey-262k9.4 coding upstream 148125 36506014 ~ 36533437 (-)
XLOC_009418 nphs1 coding upstream 195934 36553823 ~ 36939655 (-)
XLOC_009408 CR854907.1 non-coding downstream 568204 35780040 ~ 35780805 (-)
XLOC_009406 NA non-coding downstream 673024 35614234 ~ 35675985 (-)
XLOC_009404 CR848683.2 non-coding downstream 687641 35414466 ~ 35661368 (-)
XLOC_009405 CR848683.1 non-coding downstream 880209 35440740 ~ 35468800 (-)
XLOC_009419 NA non-coding upstream 426590 36784479 ~ 36784773 (-)
XLOC_009420 AL953844.1 non-coding upstream 516362 36874251 ~ 36874366 (-)
XLOC_009422 CR848749.2 non-coding upstream 901465 37259354 ~ 37264265 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00005930 NA coding CM030142.1 CM030142.1 10187612 ~ 10196882 (-)