XLOC_009414 (si:dkey-23k10.3)


Basic Information

Item Value
gene id XLOC_009414
gene name si:dkey-23k10.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 36358144 ~ 36369743 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018508
CTGCTTGGGCCGTAGATCTGTCTGGATCCAAGTCTGCAGCCTCGTTTGTGTAGTATTGTTTACAATATAGCCCAGTAACTGAGGTTAGCCTCATGTTCTCAGCAGTTGTCTAAAAACTGCACAGAAATGGTGTTTCTGCACACCACTCATCTTTATTCAGGTCAAACAGAGTCTACAGTTCTACGTTCCTTCGTTCGACCATCATACATATTAAAATTTGAGAGAAACTGTTATCACGAGTTTTCCAGGATTCATCTGCTCTCTACTCTGCTGCAATGGCAAGTTAATCTGGAAACGTTGAGGTTTAGTGCTTGTGGAATCACAGATGAGGCCTGTTTTGCTCTGGCTAAAGCTCTGACATCAAAACTctcacacctgagagaactgGATCTGTCTGAAAACAAACTGGGAGATGCAGGGGTGATGGTGCTCTCTGCTGCACTCGAAAATAATTGTTCTGATCTTGTATCATTGAAGATGAATGATTGTGATCTCACATATGAAGGTTGTAGTCATTTGGCTTCAGCTCTCGcatcaaacccctcacacctaaGAGAGCTGGATCTGTCAAAGAATAAGCTAGATGATGTAGAAATGTTGGTGCTCGCTGCTGGTCTGGAAAATTCTTCCTGCAAATTGGAGAAACTGAGGTTGGTCAAGTGTGGTTTAACTGATGAAGGTTTTGTTGTTCTTAATaaagctctgagatcaaacccttcaCACCTAAAAGAGCTGGATCTGTCTGAGAATAGCCTATGCTATTTACATACAATGCTGCTCTCTTCTGTATTGGAGAGTCCTTACTGGGAGCTGAAGACATTAAAATTGGTGAATTGTAGTTTTACAGAAGAAGGTGGTGCAGCTCTGATGTCTGCTCTGAGATcgaacccctcacacctgagagagctggatctgtcAAAGAATAACATAGGTTACTTAACCATGATGGTGCTGTCCTCAGCCATGGAGATTCCTTACTGGGAGCTAGAAATACTGAGGTTAAATGATTGTGGAATCACAGATGATGGTTTTGCTGCTCTCGGTGCAGGTCTTAGATCAAACCCTTCATACCTGAGAGAGTTGGATCTGTCTAAAAATAAACTGGGAGAATTTGGGGTACACATGCTCTCTATTGCACTGGAGATGCCTTATTGTCAACTTGAAACACTGAGGTTGGTCAGTTGTGACATCACAGGTAATGGTTGGATTGTTCTGgtatcagctctgagatcaaaccccTCACACTTGAGAAATCTGGATCTCTCTGGGAATAACCTTGAATGCTTCGAAATAAAGCTGCTTTCTGAAGTATTGGAGAGTCCATACTGTAAACTGGAGACCTTGAAATTGCGTAATTGTAATCTCAAAGATGAAGAATGTGTTTCACTGGCATCTGCTCTGAGATTGAAGATCTCGAAGCTTAGAGAGCTGGATCTGTCTGAGAATAAActaggagattcaggagtcaaggcTTTTTTTGCTGAGCTAGAGGGACATTTATCAAAATTTGATGCTTTAAGATTTGTGAATTGTGGTCTCACAGATGAAGGATGTGGTGTACTAGCTTCAGTTCTGAgctcaaacccctcacacctgaaaGAGCTGGATCTGTCTGGAAATAAAGTGGAAGATTCAGGAGTGAAGATGCTCTCTGATGGACTAGAGGATTATTGCTGCCGACTGGAAACATTAAAGTTGGTGGGTTGTGGTCTCACAGATGAAGGTTGTGCTTCTCTGGCTTCAGCGTTGACATCAAACTCCTCACACCTAAGGGTACTGGATCTTTCTAAAAACAAACTTTCAGACTCAGGAGTTAGACTGATCTCGACTGGACTGGAGAATCCCCATTGTAAAGTGGAAATCCTCTGGCTGGTCGATTGTGATGTGAACGATGAAGGATGTGCagctctggcttcagctctgacATTTAACTTCTCAAATCTGCGAGAGCTGGATCTGTCTGAGAATAATCTAGGAGATTTTGGAGTGAAGCTTCTCAGTGCTGGACTGGAGGATCCccactgtaaactggagatacTGAAGTTAAAAAATTGTGGCTTCACAGATGGAGGTATTGCTGCTCTGGCTCCTGTTCTAGGATCAGATCACTCATACCTGAAAAATGTGGATCTGTCTGGTAACAAGTTTGAGGATTTTGGGGTGCAGCTCCTTTCTATTGCATTTTACTAAACATTCTTGAGGCAACAGAA
>TCONS_00018509
GTTGGTCAAGTGTGGTTTAACTGATGAAGGTTTTGTTGTTCTTAATaaagctctgagatcaaacccttcaCACCTAAAAGAGCTGGATCTGTCTGAGAATAGCCTATGCTATTTACATACAATGCTGCTCTCTTCTGTATTGGAGAGTCCTTACTGGGAGCTGAAGACATTAAAGTAAGATTATGAATCAAACCTGAGGCAAACCTCGTAAGATGCATCTTAGCAGTTGTCCATTGTTGCACTGGTGATTATTGTGtgcatattttgttttattttgtattttttatcttGCAGATTGGTGAATTGTAGTTTTACAGAAGAAGGTGGTGCAGCTCTGATGTCTGCTCTGAGATcgaacccctcacacctgagagagctggatctgtcAAAGAATAACATAGGTTACTTAACCATGATGGTGCTGTCCTCAGCCATGGAGATTCCTTACTGGGAGCTAGAAATACTGAGGTTAAATGATTGTGGAATCACAGATGATGGTTTTGCTGCTCTCGGTGCAGGTCTTAGATCAAACCCTTCATACCTGAGAGAGTTGGATCTGTCTAAAAATAAACTGGGAGAATTTGGGGTACACATGCTCTCTATTGCACTGGAGATGCCTTATTGTCAACTTGAAACACTGAGGTTGGTCAGTTGTGACATCACAGGTAATGGTTGGATTGTTCTGgtatcagctctgagatcaaaccccTCACACTTGAGAAATCTGGATCTCTCTGGGAATAACCTTGAATGCTTCGAAATAAAGCTGCTTTCTGAAGTATTGGAGAGTCCATACTGTAAACTGGAGACCTTGAAATTGCGTAATTGTAATCTCAAAGATGAAGAATGTGTTTCACTGGCATCTGCTCTGAGATTGAAGATCTCGAAGCTTAGAGAGCTGGATCTGTCTGAGAATAAActaggagattcaggagtcaaggcTTTTTTTGCTGAGCTAGAGGGACATTTATCAAAATTTGATGCTTTAAGATTTGTGAATTGTGGTCTCACAGATGAAGGATGTGGTGTACTAGCTTCAGTTCTGAgctcaaacccctcacacctgaaaGAGCTGGATCTGTCTGGAAATAAAGTGGAAGATTCAGGAGTGAAGATGCTCTCTGATGGACTAGAGGATTATTGCTGCCGACTGGAAACATTAAAGTTGGTGGGTTGTGGTCTCACAGATGAAGGTTGTGCTTCTCTGGCTTCAGCGTTGACATCAAACTCCTCACACCTAAGGGTACTGGATCTTTCTAAAAACAAACTTTCAGACTCAGGAGTTAGACTGATCTCGACTGGACTGGAGAATCCCCATTGTAAAGTGGAAATCCTCTGGCTGGTCGATTGTGATGTGAACGATGAAGGATGTGCagctctggcttcagctctgacATTTAACTTCTCAAATCTGCGAGAGCTGGATCTGTCTGAGAATAATCTAGGAGATTTTGGAGTGAAGCTTCTCAGTGCTGGACTGGAGGATCCccactgtaaactggagatacTGAAGTTAAAAAATTGTGGCTTCACAGATGGAGGTATTGCTGCTCTGGCTCCTGTTCTAGGATCAGATCACTCATACCTGAAAAATGTGGATCTGTCTGGTAACAAGTTTGAGGATTTTGGGGTGCAGCTCCTTTCTATTGCATTTTACTAA
>TCONS_00018510
GTTTACAATATAGCCCAGTAACTGAGGTTAGCCTCATGTTCTCAGCAGTTGTCTAAAAACTGCACAGAAATGGTGTTTCTGCACACCACTCATCTTTATTCAGGTCAAACAGAGGTAAGTGGGTataaggtaaaaatgtttttatcctattggaacaacatgaatcgAAAACGAAACCTAGAGCATTTTTTGGGAATCGAAACTCTCAAACTGACCCGTTTGTCGTTTCCCCCAGTCTACAGTTCTACGTTCCTTCGTTCGACCATCATACATATTAAAATTTGAGAGAAACTGTTATCACGAGTTTTCCAGGATTCATCTGCTCTCTACTCTGCTGCAATGGCAAGTTAATCTGGAAACGTTGAGGTTTAGTGCTTGTGGAATCACAGATGAGGCCTGTTTTGCTCTGGCTAAAGCTCTGACATCAAAACTctcacacctgagagaactgGATCTGTCTGAAAACAAACTGGGAGATGCAGGGGTGATGGTGCTCTCTGCTGCACTCGAAAATAATTGTTCTGATCTTGTATCATTGAAGATGAATGATTGTGATCTCACATATGAAGGTTGTAGTCATTTGGCTTCAGCTCTCGcatcaaacccctcacacctaaGAGAGCTGGATCTGTCAAAGAATAAGCTAGATGATGTAGAAATGTTGGTGCTCGCTGCTGGTCTGGAAAATTCTTCCTGCAAATTGGAGAAACTGAGGTTGGTCAAGTGTGGTTTAACTGATGAAGGTTTTGTTGTTCTTAATaaagctctgagatcaaacccttcaCACCTAAAAGAGCTGGATCTGTCTGAGAATAGCCTATGCTATTTACA

Function

symbol description
si:dkey-23k10.3 Orthologous to human RNH1 (ribonuclease/angiogenin inhibitor 1).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-131126-11 Orthologous to human RNH1 (ribonuclease/angiogenin inhibitor 1).

Ensembl:

ensembl_id ENSDARG00000097653

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018508 False 2210 mRNA 0.43 13 36358144 36369743
TCONS_00018509 False 1660 mRNA 0.42 8 36358164 36365840
TCONS_00018510 True 831 lncRNA 0.41 4 36365724 36369686

Neighbor

gene id symbol gene type direction distance location
XLOC_009413 si:dkey-23k10.5 coding downstream 255 36349009 ~ 36357889 (-)
XLOC_009412 si:dkey-23k10.2 coding downstream 10249 36329368 ~ 36347895 (-)
XLOC_009411 ostn coding downstream 109057 36228835 ~ 36249087 (-)
XLOC_009410 col4a4 coding downstream 302743 35951888 ~ 36055401 (-)
XLOC_009409 irs1 coding downstream 428074 35888549 ~ 35930070 (-)
XLOC_009415 NA coding upstream 51848 36421591 ~ 36437846 (-)
XLOC_009416 NA coding upstream 130463 36500206 ~ 36503189 (-)
XLOC_009417 si:dkey-262k9.4 coding upstream 136271 36506014 ~ 36533437 (-)
XLOC_009418 nphs1 coding upstream 184080 36553823 ~ 36939655 (-)
XLOC_009419 NA coding upstream 414736 36784479 ~ 36784773 (-)
XLOC_009407 NA non-coding downstream 471771 35761681 ~ 35886373 (-)
XLOC_009408 CR854907.1 non-coding downstream 577339 35780040 ~ 35780805 (-)
XLOC_009406 NA non-coding downstream 682159 35614234 ~ 35675985 (-)
XLOC_009404 CR848683.2 non-coding downstream 696776 35414466 ~ 35661368 (-)
XLOC_009405 CR848683.1 non-coding downstream 889344 35440740 ~ 35468800 (-)
XLOC_009420 AL953844.1 non-coding upstream 504508 36874251 ~ 36874366 (-)
XLOC_009422 CR848749.2 non-coding upstream 889611 37259354 ~ 37264265 (-)

Expression


Co-expression Network