RNA id: TCONS_00018510


Basic Information

Item Value
RNA id TCONS_00018510
length 831
lncRNA type retained_intron
GC content 0.41
exon number 4
gene id XLOC_009414
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 36358144 ~ 36369743 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTACAATATAGCCCAGTAACTGAGGTTAGCCTCATGTTCTCAGCAGTTGTCTAAAAACTGCACAGAAATGGTGTTTCTGCACACCACTCATCTTTATTCAGGTCAAACAGAGGTAAGTGGGTataaggtaaaaatgtttttatcctattggaacaacatgaatcgAAAACGAAACCTAGAGCATTTTTTGGGAATCGAAACTCTCAAACTGACCCGTTTGTCGTTTCCCCCAGTCTACAGTTCTACGTTCCTTCGTTCGACCATCATACATATTAAAATTTGAGAGAAACTGTTATCACGAGTTTTCCAGGATTCATCTGCTCTCTACTCTGCTGCAATGGCAAGTTAATCTGGAAACGTTGAGGTTTAGTGCTTGTGGAATCACAGATGAGGCCTGTTTTGCTCTGGCTAAAGCTCTGACATCAAAACTctcacacctgagagaactgGATCTGTCTGAAAACAAACTGGGAGATGCAGGGGTGATGGTGCTCTCTGCTGCACTCGAAAATAATTGTTCTGATCTTGTATCATTGAAGATGAATGATTGTGATCTCACATATGAAGGTTGTAGTCATTTGGCTTCAGCTCTCGcatcaaacccctcacacctaaGAGAGCTGGATCTGTCAAAGAATAAGCTAGATGATGTAGAAATGTTGGTGCTCGCTGCTGGTCTGGAAAATTCTTCCTGCAAATTGGAGAAACTGAGGTTGGTCAAGTGTGGTTTAACTGATGAAGGTTTTGTTGTTCTTAATaaagctctgagatcaaacccttcaCACCTAAAAGAGCTGGATCTGTCTGAGAATAGCCTATGCTATTTACA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-131126-11 Orthologous to human RNH1 (ribonuclease/angiogenin inhibitor 1).

Ensembl:

ensembl_id ENSDART00000153477

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019215 lncRNA downstream 479351 35761681 ~ 35886373 (-) False XLOC_009407
TCONS_00019217 lncRNA downstream 479526 35864583 ~ 35886198 (-) False XLOC_009407
TCONS_00018838 lncRNA downstream 479753 35874897 ~ 35885971 (-) True XLOC_009407
TCONS_00019216 lncRNA downstream 479831 35864583 ~ 35885893 (-) False XLOC_009407
TCONS_00018498 lncRNA downstream 584919 35780040 ~ 35780805 (-) True XLOC_009408
TCONS_00018839 lncRNA upstream 51905 36421591 ~ 36437846 (-) True XLOC_009415
TCONS_00019218 lncRNA upstream 130520 36500206 ~ 36503189 (-) True XLOC_009416
TCONS_00018840 lncRNA upstream 414793 36784479 ~ 36784773 (-) True XLOC_009419
TCONS_00018519 lncRNA upstream 889668 37259354 ~ 37264265 (-) True XLOC_009422
TCONS_00019219 lncRNA upstream 1361369 37731055 ~ 37733875 (-) True XLOC_009433
TCONS_00018506 mRNA downstream 7835 36351219 ~ 36357889 (-) False XLOC_009413
TCONS_00018507 mRNA downstream 9460 36353080 ~ 36356264 (-) True XLOC_009413
TCONS_00018505 mRNA downstream 12741 36349009 ~ 36352983 (-) False XLOC_009413
TCONS_00018504 mRNA downstream 17829 36329913 ~ 36347895 (-) True XLOC_009412
TCONS_00018503 mRNA downstream 17866 36329368 ~ 36347858 (-) False XLOC_009412
TCONS_00018511 mRNA upstream 136328 36506014 ~ 36533437 (-) False XLOC_009417
TCONS_00018512 mRNA upstream 136448 36506134 ~ 36533322 (-) False XLOC_009417
TCONS_00018514 mRNA upstream 184137 36553823 ~ 36939655 (-) False XLOC_009418
TCONS_00018515 mRNA upstream 186817 36556503 ~ 36660789 (-) False XLOC_009418
TCONS_00018516 mRNA upstream 186817 36556503 ~ 36727462 (-) True XLOC_009418
TCONS_00018488 other downstream 1153487 35167295 ~ 35212237 (-) True XLOC_009400
TCONS_00018481 other downstream 1252938 35095205 ~ 35112786 (-) False XLOC_009398
TCONS_00018452 other downstream 2086189 34279421 ~ 34279535 (-) True XLOC_009383
TCONS_00018421 other downstream 2631618 33706680 ~ 33734106 (-) True XLOC_009372
TCONS_00018418 other downstream 2702552 33663055 ~ 33663172 (-) True XLOC_009370
TCONS_00018513 other upstream 159779 36529465 ~ 36533247 (-) True XLOC_009417
TCONS_00018517 other upstream 504565 36874251 ~ 36874366 (-) True XLOC_009420
TCONS_00018535 other upstream 1358148 37727834 ~ 37729166 (-) True XLOC_009432
TCONS_00018590 other upstream 3699325 40069011 ~ 40069127 (-) True XLOC_009467
TCONS_00018622 other upstream 5023715 41393401 ~ 41396073 (-) True XLOC_009478

Expression Profile

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