XLOC_009433 (si:dkey-42l23.7)


Basic Information

Item Value
gene id XLOC_009433
gene name si:dkey-42l23.7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 37731055 ~ 37733875 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018536
AGTGCTGAAGTGGTCAGCAACATTGAAGAACCGACATGCTAAATTAAGCAATACCCAACAGCATATATTTGCTGAGGACCATATTTAGTTTTATCAGTCAATAGGGATGTACCAGGGTTGCTCTGGTAGAAAACCAACTATCTGTTACCATAAACAAGAAGACGGAACAAGATCAAGACTCGACTCTTTCCACTGCATTGACACCTCAACATGGAAAACAGCAGTTTTGGGCTTAAAAATGTGACTGGAAACTCAACAGACAAGAGCACTGTGGATAACAAGggatttgatattttttttgccTGCATTTTCACTGTAACCGTGGTAGTGGGTGTCATTGGAAATGGGCTGGTCATATTTCTGGCCGGCTGCAGAATGAAGACGACTGTCAACTCCATTTGGTTTCTGAATTTGGCGATTACAGACTTcatcttttttttactttcaatCACAAATTATTTCTTAATCGTGAGTAATCAGCACAGTGTCTTCACAGGCAGCCTTTTTAGCATTTCATTTACACAAAATGTGTTTGTTAGCGTTTGGACTCTTGTAGTTATTAGTCTGGATCGATGCCTGTGCACATGGATGGCTGTTTGGGCTCAAAATAACAGAACTTTGCGTAAAGCCAGAATCATCTGCATCATCATCTTTGTTTCATCCATAGTCTACATTTTACCTTACTTCAACCTTTTTGAGACTACATTTACAATTCGTGCCACATATGGATTTATATTGTCCTTTCTCATCCCCTTCCTGATCATTGCATCTTCATACATCGCTATTGGAGTAAAAATCAATCGCCTCAAAAAGAGGAAGCAGCTCAAGCCATACAGACTCATTATAACTGTAATCCTGACTTTCTTCATCTGTTCATTTccacaacatgtttgctatttTTTGATGGCAAAAGCAGAAAAGAATAATTGGACTCTCCCTTATCAGTTTTggaacatatttatttttactctctACCTGGTTAATCTCAACAACAGTCTGAACCCATTTCtctatgtgttcatgtgtgatgaTTATAAGAAGAAGCTGAAACAATCTCTGCTGCTGGTGCTGGAGACGGCGTTTGCTGAAGATCATCTGGACATTAAAGATATAAGACAGACACAAACAGATGAGCAAGAGATGAAAACCACACATGAATTGCTAAAAAtgtagaatctttttttttttttggggggggggggggggggatcttTTAAATCATTGCTAATACTGCATATAATTATCACAGTTAAACAGTAACTGTCATCTGTATTTAGCATAATTTTCTGTCTAAGACATCTCTTGTAAATTATAGATTTATAAATCCAGGTTTTGTGCTTGGTTTAGTTTTGTGTTCTTGTTTTCAGTGTCTGTATATTCACTTAGGGCTGATTTCATTGTTTAGTTCAGTGTGTGTATTTAAGTCTCAGTCTGtttttgtagaattttttttgaCGTTGACCTGTTTGTctattttattagattaaaagCATTGCTGTGTGcataatttatttctattttctttAATCAGTACTAACACTTTGTTTATTAGTCGGATGACCAGTTATGGATTTTTTATGATATCGGCTAAATAGTTAAAgtcattttaaagcttttttgtttaagtcttgttaattcttgtttagGTGGCAGATTCCAGACACTAGTTGTGTCATGTTTCAAATGTTGTAATCTCTCTTTCATGTCTGTCATGCCAAATCCTGTCAAGCCTAGTATGAGTGTGTATTAATGCTGTTTTTCCCCAGGAATGTTTcagttgttttgctttgtttttggaaaataaaatccTTCATTTCTGCAA
>TCONS_00019219
CATCTCAAAGTAGTTGTCAACAGGGATTTAGAAACAGCCCATTTATGAGAAGTGGTATTGAGTCATCTGAGCGAGACACGGGTTCCATCTGTGAGGCATTGTGAAGTGCGGGGTAAAGGGTTTGGCAGGTAAGTTGTTCCTTGACGGCATATTTGTAACTACCCATGTATGTTTGATATTAAGTCTGTGATGTTGTTAATGACCCGCGATCGACTGCTTTAGTTAAGTTTACTAAGCTTTAGTTTCCGTGTGAAACAACAGTGAAAGTTCTGGCATCGGCATCGCGGCTAATCCCGATGTCATCGTTGGCATCTTGTTGTGTTTGATTATGATTCAGTGTACTATATTCCACATTTGTTATGCCTTATGCTGTCACACGTCCTTTATATAATGCAGCTTTTGTAATCTATGTCAATTTTCTGTTTACACCCAGCATACATTAGTCTGCTGACTGCACTTTAAGAGAGCTGCAAATACTGTATTGTTTGTAACGGGGATATTTATTGTGTCAGTACATAAACATTTTTTgtgtttgatattttattaattacttatACTTATTGTTCATCGCAGAAAACTACCTCCTTGCTCACAATAAAAGGTGGAAAATATCTCCTGACTCCTACTCCTTAATCAGAGTGCTGAAGTGGTCAGCAACATTGAAGAACCGACATGCTAAATTAAGCAATACCCAACAGCATATATTTGCTGAGGACCATATTTAGTTTTATCAGTCAATAGGGATGTACCAGGGTTGCTCTGGTAGAAAACCAACTATCTGTTACCATAAACAAGAAGACGGAACAAGATCAAGACTCGACTCTTTCCACTGCATTGACACCTCAACATGGGTAAGATTTTAATATCTATCATGCATATTACATGTTTATGGAAACTTTTCAGAATATAAATACAAGATTGTTTATAACACAGACAATGCACAGAGATAATGTAAAATCCATATAATTAAGCACAAGATACACATTTACTTTGTCAAACAAATGACCCTTCATACAAAGATGTGCTTCTAATGAATCCACACACTGCAAATGCAAAATTATTCAATATAAAAGACTAATTATTGGTTTTATTCTAATgaggttttattaaaatgtttgagaGGAGCATGATCAGATATACTCTAATAGCTAATAGTTCAGAAATTTGCAGCACAATGACACACTGACAGTCCTTTCTGTGTTCCCTTGTTTAGAAAACAGCAGTTTTGGGCTTAAAAATGTGACTGGAAACTCAACAGACAAGAGCACTGTGGATAACAAGggatttgatattttttttgccTGCATTTTCACTGTAACCGTGGTAGTGGGTGTCATTGGAAATGGGCTGGTCATATTTCTGGCCGGCTGCAGAATGAAGACGACTGTCAACTCCATTTGGTTTCTGAATTTGGCGATTACAGACTTcatcttttttttactttcaatCACAAATTATTTCTTAATCGTGAGTAATCAGCACAGTGTCTTCACAGGCAGCCTTTTTAGCATTTCATTTACACAAAATGTGTTTGTTAGCGTTTGGACTCTTGTAGTTATTAGTCTGGATCGATGCCTGTGCACATGGATGGCTGTTTGGGCTCAAAATAACAGAACTTTGCGTAAAGCCAGAATCATCTGCATCATCATCTTTGTTTCATCCATAGTCTACATTTTACCTTACTTCAACCTTTTTGAGACTACATTTACAATTCGTGCCACATATGGATTTATATTGTCCTTTCTCATCCCCTTCCTGATCATTGCATCTTCATACATCGCTATTGGAGTAAAAATCAATCGCCTCAAAAAGAGGAAGCAGCTCAAGCCATACAGACTCATTATAACTGTAATCCTGACTTTCTTCATCTGTTCATTTccacaacatgtttgctatttTTTGATGGCAAAAGCAGAAAAGAATAATTGGACTCTCCCTTATCAGTTTTggaacatatttatttttactctctACCTGGTTAATCTCAACAACAGTCTGAACCCATTTCtctatgtgttcatgtgtgatgaTTATAAGAAGAAGCTGAAACAATCTCTGCTGCTGGTGCTGGAGACGGCGTTTGCTGAAGATCATCTGGACATTAAAGATATAAGACAGACACAAACAGATGAGCAAGAGATGAAAACCACACATGAATTGCTAAAAAtgtagaatctttttttttttttggggggggggggggggggatcttTTAAATCATTGCTAATACTGCATATAATTATCACAGTTAAACAGTAACTGTCATCTGTATTTAGCATAATTTTCTGTCTAAGACATCTCTTGTAAATTATAGATTTATAAATCCAGGTTTTGTGCTTGGTTTAGTTTTGTGTTCTTGTTTTCAGTGTCTGTATATTCACTTAGGGCTGATTTCATTGTTTAGTTCAGTGTGTGTATTTAAGTCTCAGTCTGtttttgtagaattttttttgaCGTTGACCTGTTTGTctattttattagattaaaagCATTGCTGTGTGcataatttatttctattttctttAATCAGTACTAACACTTTGTTTATTAGTCGGATGACCAGTTATGGATTTTTTATGATATCGGCTAAATAGTTAAAgtcattttaaagcttttttgtttaagtcttgttaattcttgtttagGTGGCAGATTCCAGACACTAGTTGTGTCATGTTTCAAATGTTGTAATCTCTCTTTCATGTCTGTCATGCCAAATCCTGTCAAGCCTAGTATGAGTGTGTATTAATGCTGTTTTTCCCCAGGAATGTTTcagttgttttgctttgtttttggaaaataaaatccTTCATTTCTGCAA

Function

symbol description
si:dkey-42l23.7 Predicted to enable G protein-coupled receptor activity and complement receptor activity. Predicted to be involved in several processes, including complement receptor mediated signaling pathway; phospholipase C-activating G protein-coupled receptor signaling pathway; and positive regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human GPR33 (G protein-coupled receptor 33).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007200 phospholipase C-activating G protein-coupled receptor signaling pathway biological_process
GO:0007204 positive regulation of cytosolic calcium ion concentration biological_process
GO:0006954 inflammatory response biological_process
GO:0002430 complement receptor mediated signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004875 complement receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-326 Predicted to enable G protein-coupled receptor activity and complement receptor activity. Predicted to be involved in several processes, including complement receptor mediated signaling pathway; phospholipase C-activating G protein-coupled receptor signaling pathway; and positive regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human GPR33 (G protein-coupled receptor 33).

Ensembl:

ensembl_id ENSDARG00000076710

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018536 False 1822 mRNA 0.36 2 37731055 37733238
TCONS_00019219 True 2821 lncRNA 0.36 1 37731055 37733875

Neighbor

gene id symbol gene type direction distance location
XLOC_009432 CR848836.1 coding downstream 1889 37727834 ~ 37729166 (-)
XLOC_009431 si:dkey-117a8.1 coding downstream 11376 37707269 ~ 37719679 (-)
XLOC_009430 si:dkey-117a8.3 coding downstream 47287 37682403 ~ 37683768 (-)
XLOC_009429 si:ch211-137j23.6 coding downstream 56935 37649268 ~ 37674120 (-)
XLOC_009428 si:ch211-137j23.7 coding downstream 85241 37639184 ~ 37645814 (-)
XLOC_009434 si:dkey-42l23.6 coding upstream 7507 37741382 ~ 37743613 (-)
XLOC_009435 si:dkey-42l23.5 coding upstream 17238 37751113 ~ 37752236 (-)
XLOC_009436 si:dkey-42l23.4 coding upstream 32222 37766097 ~ 37767901 (-)
XLOC_009437 si:dkey-42l23.9 coding upstream 39251 37773126 ~ 37774544 (-)
XLOC_009438 si:dkey-42l23.3 coding upstream 44699 37778574 ~ 37779978 (-)
XLOC_009422 CR848749.2 non-coding downstream 466790 37259354 ~ 37264265 (-)
XLOC_009420 AL953844.1 non-coding downstream 856689 36874251 ~ 36874366 (-)
XLOC_009419 NA non-coding downstream 946282 36784479 ~ 36784773 (-)
XLOC_009416 NA non-coding downstream 1227866 36500206 ~ 36503189 (-)
XLOC_009444 CR944667.3 non-coding upstream 142841 37876716 ~ 37880887 (-)
XLOC_009453 NA non-coding upstream 562282 38296157 ~ 38297734 (-)
XLOC_009455 NA non-coding upstream 691673 38425548 ~ 38425845 (-)
XLOC_009456 NA non-coding upstream 813952 38547827 ~ 38550804 (-)
XLOC_009457 NA non-coding upstream 1168058 38901933 ~ 38910271 (-)

Expression


Co-expression Network