XLOC_009438 (si:dkey-42l23.3)


Basic Information

Item Value
gene id XLOC_009438
gene name si:dkey-42l23.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 37778574 ~ 37779978 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018541
AAGATCAAGACTCGACTCTTTCCACTGCATTGACACCTCAAAACATGGAAAACGCCAGTTCTGCACATGAAACTGGAAACTCCACAGACAAGAGCACTGTGGAGAACAAGGGATTTATAATCTTCCTTGCCTGCATTTTCTTCACCCTTATAGTGGGTCTCATTGGAAATGGGCTGGTCATATTTCTGGCAGGCTGCAGAATGAAGATAACTGTCAACTCCATTTGGTTTCTGAATTTGGCGATTGCAGACttcatctttattttagtttCAATCATAGATCGTTCCTTATGGTTGAGTGGGTGTCACAGTACCTTCACAAACTACTTTGTCTCTATCACAATATCTCTAAATCTGTTTGCTAGCATTTTGTTTCTTGTAGTTATCAGTCTGGATCGATGCCTGCGCACATGGATGGCTGTTTGGGCTCAAAATAACAGAACTCTGCGTAAAGCTAGAATCATTTGCATCATCATCTGGGTTTCATCCATCGGCTACATTCtccctttttacatttttgaagttacatatacattttttgtcaCATGTCGATTTATAGTGACCTTTCTCATCCCCTTCCTGATCATTGCATCTTCATACATCGCTATTGGAGTAAAAATCAATCGCCTCAATATGGGGAAGCAGCTCAGGTCATACAGACTCATTATAACTGTAATCCTGACTTTCTTCATCTGTTCATTTCCACACCATGTTTGCTGTTTTTATAGATTAactgcacaaaataataattggaCTCTCACTTTTCAATTTTGGaagctatttatttttagtgtC

Function

symbol description
si:dkey-42l23.3 Predicted to enable G protein-coupled receptor activity and complement receptor activity. Predicted to be involved in several processes, including complement receptor mediated signaling pathway; phospholipase C-activating G protein-coupled receptor signaling pathway; and positive regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000053911

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018541 True 794 mRNA 0.39 2 37778574 37779978

Neighbor

gene id symbol gene type direction distance location
XLOC_009437 si:dkey-42l23.9 coding downstream 4030 37773126 ~ 37774544 (-)
XLOC_009436 si:dkey-42l23.4 coding downstream 10673 37766097 ~ 37767901 (-)
XLOC_009435 si:dkey-42l23.5 coding downstream 26338 37751113 ~ 37752236 (-)
XLOC_009434 si:dkey-42l23.6 coding downstream 34961 37741382 ~ 37743613 (-)
XLOC_009433 si:dkey-42l23.7 coding downstream 44699 37731055 ~ 37733875 (-)
XLOC_009439 si:dkey-42l23.2 coding upstream 15308 37795286 ~ 37799496 (-)
XLOC_009440 si:dkey-42l23.1 coding upstream 26133 37806111 ~ 37807023 (-)
XLOC_009441 ctrl coding upstream 40280 37820258 ~ 37829160 (-)
XLOC_009442 si:dkey-238d18.3 coding upstream 51626 37831604 ~ 37850969 (-)
XLOC_009443 si:dkey-238d18.4 coding upstream 74505 37854483 ~ 37875601 (-)
XLOC_009432 CR848836.1 non-coding downstream 49408 37727834 ~ 37729166 (-)
XLOC_009422 CR848749.2 non-coding downstream 514309 37259354 ~ 37264265 (-)
XLOC_009420 AL953844.1 non-coding downstream 904208 36874251 ~ 36874366 (-)
XLOC_009419 NA non-coding downstream 993801 36784479 ~ 36784773 (-)
XLOC_009416 NA non-coding downstream 1275385 36500206 ~ 36503189 (-)
XLOC_009444 CR944667.3 non-coding upstream 96738 37876716 ~ 37880887 (-)
XLOC_009453 NA non-coding upstream 516179 38296157 ~ 38297734 (-)
XLOC_009455 NA non-coding upstream 645570 38425548 ~ 38425845 (-)
XLOC_009456 NA non-coding upstream 767849 38547827 ~ 38550804 (-)
XLOC_009457 NA non-coding upstream 1121955 38901933 ~ 38910271 (-)

Expression


Co-expression Network