XLOC_009443 (si:dkey-238d18.4)


Basic Information

Item Value
gene id XLOC_009443
gene name si:dkey-238d18.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 37854483 ~ 37875601 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018550
GAAACTTCATTAACACTATTGCTTGACATACGGCTTAATATGCAATATCGTCATTACAAATATGAGACCGCAAAAAGGTGGTGTGTCGCCTGATGAGCGAGGTCAGGTATGGCGTTTTCTGTTCAGCATGTACCCCTGCAGCTCTACGGCTCTGGAGCGCCCTCTACTGCTGGAGCAGATGGCGGTGCGCTATCAGGTCATGAAGAGGAAATGGCAACAGCTGCTTCCTGGAGCCGTTCGCTTGCGTCTTAATGGCACTGACGcTGAGCTGTTGACAGCAGTGAAGTTTTTTGACCAGAGGCAGGACAGAGAGCTAAATAAACAACAGATTCAGTCAGACGAGACACAAGAGAGATTATCCTTTCTGCAACTGCAGGCTCAGGTGCTATTTGAAAGGGTAACTTTTGACCTGGAAGAACTTCAGGAGGCCATACGCATCATTGATAAGGATGTTCCTCGAACTGACAGAGATCTTCCATACTACCGGAATGAAGGTTTGGGTAATCTGCTGGTGTTAAGAGATATCCTGATCACATATGCTGCTTTTCATCCAGAAGTGAGTTATGCTCAGGGCATGAATGACCTGTGCAGTCGCTTTCTGGAGGTTCTCGACTCAGAAGTCGACACTTACTGGAGCTTCTCCTGCTACATGGAAAAGTTTTCCAAAGATTTCCGCGCTGATGGACTTTACCGTAAAATGGAATTAGAAGCTGCTTTACTGAAAGAGCTGGATCCTCAACTACACTCGCATCTCGTCACCGACAACATGGAAAGGCTCACGTTTTGTCACAGGTGGCTTCTGTTGGGTTTCCAGCGTGAGTTCGAGCACAGCGATGCTCTGCGACTATTCGAGATTCTCAGCTGTGATCATCTGGAGCTCATCTCACAGCAGGTGGACTGCGTTCGCTATCAGGAGAGACTCGCACGCAAACACAGCCTGGAGGAGGAACCTGTGGCTGATCTACACGCTGTAAACACAGATTTCACCTTTGAACTTTTCATGTGCGCCACCATATTGCTGGAGAACAGAGAGGCTTTACTGAGCTGCAAGAATGAGGTTCAGCTCATACAGTTTACTAGCAGTCTACAGGGCAAGCTGGATCTGAACGCCACCCTGAAAAAAGCTGAGGAACTGATGAGGAACTACTGCAAAAGCTCCTCCTGGGACTATTTGAGCGGCCTCTATCGCATGCGCAAAAGCAAAGAGGACCACTTCTTCTTTCATCTCCGGAACCTTTTTTCCTGAGACCAAACGACCTGTGAGGATTTTTCATGGAAACGGTCTGAATGACATGAACTTGTGACTTTACGCTCCAGAaggactttaattttatttatttttttaagtgctgCTTTTAATCAGGGTTTTGTACAGGAACAAGAGCGACTTCTTCATAAGTGTTAATATTATATTAGTTCCTGTATTCCatctttgtttttaaagaaatagttcacccaaaaatgaaaattctgccatcatttaatcTCTCCCTCCATTTGTTTTTCCCAAACCCACTTCAGTTTCTATTGATTTCCatatttttgtttcttcttttttccccaacattcttcagaatatgtttttttttttttttttaagtttaaatgttACATAAATGTTTAGGACCATTAGTGTGAGTaaatcatttttgggtaaactgttcCTTTAGGCTTCTATTGTGATGCCAGAATTAATGTGAGAGAAGTTTTTTTGACATTTAACCTGACCGATGGTATTGAAATTATTTCagactgcaaaaatgctttacttatttttaggttttgtcttgtttttagtctaaatgtctaaaaaaaatgctttttgatttcatttttagatacgtaaaaacttttaaaacttaaCAAAGCAAAccaatatttttaattgtcttgaaaatgctttttttgcagtgcattatTAGTAGCATTTGGGAATTTACCATTTATTTGATACTACTGAATTCTATGttaaatgtaatatgtaaaaaCTTAGCATGCAATATCAAATGTACTTTAAATCTGAACAGGATTTTATAGTGTGGAAAAAAACATCAGACAAACAAAAGGAATCATTTCTGCTGATCCAAGCGAGACCCAACGTGTGAGTATTATTCAGTCACTCAAACATCTGGTGCTTGCGTATCGGTGATATTAGAGCATTAtataataatagaaatgcagGCCAAGTTCTGAGAAGCTCTAGAAGGCGCTCTGTGGTGTTGTCTTACCAGTCATACAGCGCTTAAGATGTACTGATCAAAAATAGCACACACTGAACCACGACACCCTGCACTGCGTTGCTTTATATCCTGTAAGAGGCACGATATATCACTAAACATATATACACAACACAAGGAGATATATGGAGTATTGCACGtaatatttgttgttatttattaagaaCTGACACATTGTTTAAGTTGTTTTTGGAGAAAGTGAATGGACTGACCAACTATTTTTGGGGGGGAAACGGGTACCGAatactgtaattattattttatttgtcatgCTGTTCTTTGATCTTTAGATTTTTTTACGTTTGCACAGATTGATTATGGTAATTAATGTAGCAATAATGAGACACTGCAATGTTTaacagacagattttttttttcaatgagagcgtgtgtgtgagaaagagagtgagagatACTGAAAGTGAGAGtgagtgttttattttaagattacTGTGTGACATTTAAGCAGTTAGTTTCTAGTGAGTCACTTCATGAAGAACAGACTCAGGAGTTTAGCTCTTAAATGTTATTGTGAAATAAACTGTGgccatttgaataaataaatgaatatttatttatatgttgttttTTCTAAACAATTTCTTCTGCTGTTGAAGCTATGGTGCACGAAATGGGctacaaacaaatcaaaataaatctaattttattttctacataatttctacactgaaaaaaagatttaatacattttaaggtaactggttgcaaataatttatatgggctgaatttaaacaaaccacATTtactaatgttcaacttaattgtttgcaaccacttaccttaaaatatttagtacatttaataaaaatttttccAGTGTAGCTTTATtactgtaacgaggagactgacacggagggatccattatgcagtatttattaatcacaacttcactcaaacacacaatatgcacctgggtgcacacacacacacacacacacacacacacacacacatccacagtagtagtaatgGTTTCAAGAATGAcggtgaacagacacagagttaccaggcatgagtaGTGAGCAGTGAGCGtaaatcagagtccgtgtatcaggcttgggtcaaaggcaggcagcgagaatcagagtccgtatatcaggcgtgggtcgtgggcaggcagaaggcaaagcaaagtaagagacaggctggagtcgtacacaagagatcaggctggagtcgtacacaagagatcaggctggatataacgctcagtaatgctggccggggctgaacaagacttcgcactgactgagtgtttgagtgcggcttatatgaggtacgtgggtcgttaacaagattcagatcaggtgtatgcgcaatcagtgtagatggatgatgtaatgccggagtccggagatggcggcctctgctggccagcgaggggaatgaccgggaccgagtcg
>TCONS_00018551
CCACAAGGGGGAGACGTTGACCTTTAGTCTACAGCGTTTCAGCTTCGCTCTTTTGGCCAGAGAGAGAATGGAAAGACAGagggtgagagagagaaagaaagagagagagagaggtcataTGACAGGGAGGAGTGAGCTCACTATCAAAACACTTTCTCGTTCATCTAAAAATGAGTTTTCTGAAAGTCCGACGAAGACTTTTTACCTACTAAGTTTTGAAGACCTCGTGACTACACGACGAGTTCAATGCCTGAGTCTTCAACGGATTTAGCACAATGATCGCATCTTGTGATACATCACATGTAGAAGGGAACTGTAAAAAGCTTCCAGACAGTACTAATGGACCGGTTGGAAAGTTTAAGGGAATGAAGTGCAGCCTTTCTGTGGGGAGTAACGGCATCTGTCGGTCGGTCGCACCTGTGATCTCACCTGCGTCTACGTGCGCGCGCATCACTCTACCTGGAGTGATGGACGCGGAGGGGCGAGTGGACGAATCCAGACTCAGGACGCATATATTCAAAAACGGTGGTGTGTCGCCTGATGAGCGAGGTCAGGTATGGCGTTTTCTGTTCAGCATGTACCCCTGCAGCTCTACGGCTCTGGAGCGCCCTCTACTGCTGGAGCAGATGGCGGTGCGCTATCAGGTCATGAAGAGGAAATGGCAACAGCTGCTTCCTGGAGCCGTTCGCTTGCGTCTTAATGGCACTGACGcTGAGCTGTTGACAGCAGTGAAGTTTTTTGACCAGAGGCAGGACAGAGAGCTAAATAAACAACAGATTCAGTCAGACGAGACACAAGAGAGATTATCCTTTCTGCAACTGCAGGCTCAGGTGCTATTTGAAAGGGTAACTTTTGACCTGGAAGAACTTCAGGAGGCCATACGCATCATTGATAAGGATGTTCCTCGAACTGACAGAGATCTTCCATACTACCGGAATGAAGGTTTGGGTAATCTGCTGGTGTTAAGAGATATCCTGATCACATATGCTGCTTTTCATCCAGAAGTGAGTTATGCTCAGGGCATGAATGACCTGTGCAGTCGCTTTCTGGAGGTTCTCGACTCAGAAGTCGACACTTACTGGAGCTTCTCCTGCTACATGGAAAAGTTTTCCAAAGATTTCCGCGCTGATGGACTTTACCGTAAAATGGAATTAGAAGCTGCTTTACTGAAAGAGCTGGATCCTCAACTACACTCGCATCTCGTCACCGACAACATGGAAAGGCTCACGTTTTGTCACAGGTGGCTTCTGTTGGGTTTCCAGCGTGAGTTCGAGCACAGCGATGCTCTGCGACTATTCGAGATTCTCAGCTGTGATCATCTGGAGCTCATCTCACAGCAGGTGGACTGCGTTCGCTATCAGGAGAGACTCGCACGCAAACACAGCCTGGAGGAGGAACCTGTGGCTGATCTACACGCTGTAAACACAGATTTCACCTTTGAACTTTTCATGTGCGCCACCATATTGCTGGAGAACAGAGAGGCTTTACTGAGCTGCAAGAATGAGGTTCAGCTCATACAGTTTACTAGCAGTCTACAGGGCAAGCTGGATCTGAACGCCACCCTGAAAAAAGCTGAGGAACTGATGAGGAACTACTGCAAAAGCTCCTCCTGGGACTATTTGAGCGGCCTCTATCGCATGCGCAAAAGCAAAGAGGACCACTTCTTCTTTCATCTCCGGAACCTTTTTTCCTGAGACCAAACGACCTGTGAGGATTTTTCATGGAAACGGTCTGAATGACATGAACTTGTGACTTTACGCTCCAGAaggactttaattttatttatttttttaagtgctgCTTTTAATCAGGGTTTTGTACAGGAACAAGAGCGACTTCTTCATAAGTGTTAATATTATATTAGTTCCTGTATTCCatctttgtttttaaagaaatagttcacccaaaaatgaaaattctgccatcatttaatcTCTCCCTCCATTTGTTTTTCCCAAACCCACTTCAGTTTCTATTGATTTCCatatttttgtttcttcttttttccccaacattcttcagaatatgtttttttttttttttttaagtttaaatgttACATAAATGTTTAGGACCATTAGTGTGAGTaaatcatttttgggtaaactgttcCTTTAGGCTTCTATTGTGATGCCAGAATTAATGTGAGAGAAGTTTTTTTGACATTTAACCTGACCGATGGTATTGAAATTATTTCagactgcaaaaatgctttacttatttttaggttttgtcttgtttttagtctaaatgtctaaaaaaaatgctttttgatttcatttttagatacgtaaaaacttttaaaacttaaCAAAGCAAAccaatatttttaattgtcttgaaaatgctttttttgcagtgcattatTAGTAGCATTTGGGAATTTACCATTTATTTGATACTACTGAATTCTATGttaaatgtaatatgtaaaaaCTTAGCATGCAATATCAAATGTACTTTAAATCTGAACAGGATTTTATAGTGTGGAAAAAAACATCAGACAAACAAAAGGAATCATTTCTGCTGATCCAAGCGAGACCCAACGTGTGAGTATTATTCAGTCACTCAAACATCTGGTGCTTGCGTATCGGTGATATTAGAGCATTAtataataatagaaatgcagGCCAAGTTCTGAGAAGCTCTAGAAGGCGCTCTGTGGTGTTGTCTTACCAGTCATACAGCGCTTAAGATGTACTGATCAAAAATAGCACACACTGAACCACGACACCCTGCACTGCGTTGCTTTATATCCTGTAAGAGGCACGATATATCACTAAACATATATACACAACACAAGGAGATATATGGAGTATTGCACGtaatatttgttgttatttattaagaaCTGACACATTGTTTAAGTTGTTTTTGGAGAAAGTGAATGGACTGACCAACTATTTTTGGGGGGGAAACGGGTACCGAatactgtaattattattttatttgtcatgCTGTTCTTTGATCTTTAGATTTTTTTACGTTTGCACAGATTGATTATGGTAATTAATGTAGCAATAATGAGACACTGCAATGTTTaacagacagattttttttttcaatgagagcgtgtgtgtgagaaagagagtgagagatACTGAAAGTGAGAGtgagtgttttattttaagattacTGTGTGACATTTAAGCAGTTAGTTTCTAGTGAGTCACTTCATGAAGAACAGACTCAGGAGTTTAGCTCTTAAATGTTATTGTGAAATAAACTGTGgccatttgaataaataaatgaatatttatt

Function

symbol description
si:dkey-238d18.4 Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity and intracellular protein transport.

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0090630 activation of GTPase activity biological_process
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-307 Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity and intracellular protein transport.

Ensembl:

ensembl_id ENSDARG00000088972

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018550 False 3663 mRNA 0.40 10 37854483 37867995
TCONS_00018551 True 3261 mRNA 0.41 10 37855333 37875601

Neighbor

gene id symbol gene type direction distance location
XLOC_009442 si:dkey-238d18.3 coding downstream 3514 37831604 ~ 37850969 (-)
XLOC_009441 ctrl coding downstream 25323 37820258 ~ 37829160 (-)
XLOC_009440 si:dkey-42l23.1 coding downstream 47460 37806111 ~ 37807023 (-)
XLOC_009439 si:dkey-42l23.2 coding downstream 54987 37795286 ~ 37799496 (-)
XLOC_009438 si:dkey-42l23.3 coding downstream 74505 37778574 ~ 37779978 (-)
XLOC_009444 CR944667.3 coding upstream 1115 37876716 ~ 37880887 (-)
XLOC_009445 si:dkey-238d18.5 coding upstream 15444 37891045 ~ 37921998 (-)
XLOC_009446 si:dkey-238d18.15 coding upstream 52348 37927949 ~ 37929135 (-)
XLOC_009447 si:dkey-238d18.6 coding upstream 132901 38008502 ~ 38009344 (-)
XLOC_009448 si:dkey-24p1.1 coding upstream 225534 38101135 ~ 38129845 (-)
XLOC_009432 CR848836.1 non-coding downstream 125317 37727834 ~ 37729166 (-)
XLOC_009422 CR848749.2 non-coding downstream 590218 37259354 ~ 37264265 (-)
XLOC_009420 AL953844.1 non-coding downstream 980117 36874251 ~ 36874366 (-)
XLOC_009419 NA non-coding downstream 1069710 36784479 ~ 36784773 (-)
XLOC_009416 NA non-coding downstream 1351294 36500206 ~ 36503189 (-)
XLOC_009453 NA non-coding upstream 420556 38296157 ~ 38297734 (-)
XLOC_009455 NA non-coding upstream 549947 38425548 ~ 38425845 (-)
XLOC_009456 NA non-coding upstream 672226 38547827 ~ 38550804 (-)
XLOC_009457 NA non-coding upstream 1026332 38901933 ~ 38910271 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000352_00574884_00583420 NA coding CI01000352 null 574858 ~ 583420 (-)