XLOC_009442 (si:dkey-238d18.3)


Basic Information

Item Value
gene id XLOC_009442
gene name si:dkey-238d18.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 37831604 ~ 37850969 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018546
TGCTTAAAAAACATACTTAATGTAGtctttttaagtgtgtgtgtgtgtaaaattttaATGCAGCTCTCTGTCACTGTCTTACTAGGGCTAGAAGTCACTATGTAGTCCTAGGACAACATGACCGTAGCTCCAATGATGGAACAGTTCAGGTCAAAGAAATTGCAAAgGTCATCACCCATCCTGACAACAACATACAGACCTTATTTAACAATGATGTTACTCTGCTTAAATTATCCAGTCCAGCACAAATGACTTCCCTTGTATCTCCCGTATGTTTGGCAAGTTCTTCTTCAAAAATTGTCCCCGGAACTCTTTGTGTCACAACTGGCTGGGGCAGAACTAAAACTGAACGTAAGCCTGCAGTTCATAATGTCTGTGTCAACTTGGCCTATAACTCCTGTATAACAACAGCTGGGTCTTTCTTAATCAAACTctcacaatatattttttttgttcttttagtGAGCGCTCGTATCCTGCAGGAAGCCACCATACCAATAGTGAGTCAGTCTCAATGTAAGCAGATTTTTGGGGCGAGCAAAATCACCAACAGCATGATCTGTGCTGGAGGCTCTGGATCCTCATCTTGCCAGGGTGATTCTGGTGGCCCTCTGATGTGTGAGAGCTCAGGTGTTTGGTATCAAGTGGGCATCGTTTCCTGGGGCAACAGAGACTGCCGTGTGGATTTTCCATTAGTCTATGCCCGCGTCTCTTACTTTCGAAAATGGATTGATGAAATTATTAGATCAAACTAGAGCACTAGCAAGTATTTCAGTGATGAAACCATGTCTTCATAACCTACTGTATTTTTGACATGCTACTAAATTGAAAACTGAAAGTACCACATGACATAATGCTAAAGAAATTATTAAAGGCAATTTATATAACACTCATGTATCCACAGTTTTATTACTCTTGTATTAcactacatttgtttgttttatatgcaTACTTTTGATTAGATAAATATTCAGTGAATGATTTTGGGCCTACCTGGTATGCTTTTGGGCCTACCTGGTATGCTTATTTGTGGTAACACAGTGATCAAATCTTGTCAAAATATGTGTCAAGTGGGTGTTTAAATGtagataaatattttatttccctgattaaatatagatatttttaagcatcaca
>TCONS_00018547
GTTGTAATTGGGAAATGTATCAGATACTAGACAGAATATAAAGCCAGAGAGAGTCCTAATGGGAACAACAGCAAGGCAGTAGGTGCTTGTCTACAACAACATGATCTGGATCATTAGCTTTTTGGCTTTTGTGGCTTCCACTCtggGTTGTGGTGTGCGTCAGCCATTAGGTTGGGCTGCTAAAGAATCAACCACTAAAAAACCTATTGATGGAGACATTCATGAAGGTATAATGCAGGGAGTGGATGCTCTGCGTTGGCCCTGGCAGGTTTCTATCAAGACATCCAGTGGCGAGCATTTATGTGGAGGCTCTCTGATCAACAAATTTTGGGTCCTCACTGCTGCCCACTGTCAAATTCAGGCTAGAAGTCACTATGTAGTCCTAGGACAACATGACCGTAGCTCCAATGATGGAACAGTTCAGGTCAAAGAAATTGCAAAgGTCATCACCCATCCTGACAACAACATACAGACCTTATTTAACAATGATGTTACTCTGCTTAAATTATCCAGTCCAGCACAAATGACTTCCCTTGTATCTCCCGTATGTTTGGCAAGTTCTTCTTCAAAAATTGTCCCCGGAACTCTTTGTGTCACAACTGGCTGGGGCAGAACTAAAACTGAACtGAGCGCTCGTATCCTGCAGGAAGCCACCATACCAATAGTGAGTCAGTCTCAATGTAAGCAGATTTTTGGGGCGAGCAAAATCACCAACAGCATGATCTGTGCTGGAGGCTCTGGATCCTCATCTTGCCAGGGTGATTCTGGTGGCCCTCTGATGTGTGAGAGCTCAGGTGTTTGGTATCAAGTGGGCATCGTTTCCTGGGGCAACAGAGACTGCCGTGTGGATTTTCCATTAGTCTATGCCCGCGTCTCTTACTTTCGAAAATGGATTGATGAAATTATTAGATCAAACTAGAGCACTAGCAAGTATTTCAGTGATGAAACCATGTCTTCATAACCTACTGTATTTTTGACATGCTACTAAATTGAAAACTGAAAGTACCACATGACATAATGCTAAAGAAATTATTAAAGGCAATTTATATAACACTCATGTATCCACAGTTTTATTACTCTTGTATTAcac
>TCONS_00018548
ACAGGATGTCAAAAGGTCCAGCAGTGGGTATTGATCTGGGCACCACCTACTCATGTGTGGGAATCTTCCAGCATGGAAAGGTGGAGATCATCGCCAATGACCAGGGAAACAGAACGACCCCCAGCTACGTCGCTTTCACGGACACCGAAAGACTGATCGGAGATGCAGCCAAGAACCAAGTTGCCATGAACCCTTCTAACACTGTGTTTGATGCCAAGCGCCTGATTGGACGACGCTTTGATGACCCAGTGGTTCAATCTGACATGAAGCACTGGCCCTTTAAGGTAATCAGTGACGGCAGCAAGCCCAAAATGGAAGTGGAGTACAAAGGAGAGATAAAGACTTTCTTCCCTGAAGAGGTGTCCTCCATGGTCCTCACTAAGATGAAGGAGATCTCCGAAGCTTACCTTGGCAAGACTGTATCAAATGCAGTGATTACGGTGCCTGCTTACTTTAATGACTCCCAGCGCCAAGCCACCAAAGATGCTGGAACCATCGCTGGCCTTAATGTCCTTCGCATCATCAACGAACCAACAGCAGCTGCTATTGCATATGGATTGGACAAAAAGGTCGGTGGTGAGCGCAATGTCCTCATCTTTGATTTGGGTGGTGGCACCTTTGACGTGTCCATTCTGACCATCGAGGATGGCATTTTTGAGGTCAAGTCAACAGCAGGTGACACCCATTTGGGTGGTGAGGACTTCGACAACCGCATGGTCAACCACTTCATCACCGAGTTCAAGCGCAAGTTCAAGAAAGACATCACTGGCAATAAACGTGCTGTCCGTCGCCTGCGGACAGCATGTGAGCGTGCCAAGCGCACCCTTTCATCCAGCACACAGGCCAGCATTGAGATCGACTCTCTGTATGAAGGTGCTGACTTCTACACTTCCATCACCAGAGCCCGTTTTGAGGAGCTCAATGCTGACCTGTTTCGCGGTACACTGGAGCCAGTGGAAAAGGCTCTGCGGGATGCCAAGATGGATAAGGCACAGATCCATGACATTGTGCTGGTTGGTGGCTCCACTCGTATTCCCAAGATCCAAAAGCTGCTTCAGGACTTCTTTAATGGGCGAGATCTTAACAAGAGCATCAACCCTGATGAAGCCGTAGCTTATGGAGCTGCTGTCCAGGCAGCCATCTTAACAGGTGATACATCAGAGAATGTGCAAGACTTGTTGCTGCTGGACGTCACTCCTCTCTCTCTGGGCATTGAGACAGCAGGTGGTGTCATGACCGTGCTAATTAAGAGGAACACCACCATTCCCACTAAGCAAACCCAAACCTTTACCACCTACTCAGACAACCAGCCGGGTGTACTCATCCAGGTATATGAGGGAGAGAGAGCCATGACAAAGGACAACAACATTCTTGGCAAATTTGAGTTGACCGGCATCCCTCCTGCTCCTCGTGGTGTGCCACAGATTGAAGTTACCTTTGACATTGACGCCAATGGCATTCTCAACGTATCCGCAGTAGACAAAAGCACTGGCAAAGAGAACAAGATCACTATTACCAATGACAAAGGTCGTTTGAGCAAGGAAGACATAGAGCGTATGGTACAAGAGGCTGACCAATACAGAGCAGAGGATGAAGTACAGAGGGAAAAGGTCACCGCCAAGAACACTCTGGAGTCCTTGGCCTTTAACATGAAGAGCACTGTTGAGGACGACAAGTTGCAGGACAAGATCAGTCCAGAGGACAAGAAAACTATTACTGACAAATGCAATGAGGTCATCTCATGGCTGGACAAGAACCAGACCGCAGAAAAAGATGAGTACGAGCATCAACAGAAGGAGCTGGAAAAAGTGTGCAACCCCATCATCACTAAGCTCTATCAAGGCGCTGGTGGCATGCCAGGTGGGATGCCAGGTGGGATGCCCGGCGGTTACCCTGGAGGGCAAGGAAGTGGTTCTTCCTCTGGTCCTACCATTGAGGAAGTGGACTAACTTTTGGCACCAGAACATCCAGGCTTACACAAAGAAAGAAACCAAACACTCTGCAGCATGTCAAACAGGCTTCTTTTCAAATAGCATTTACTCACATTGGTCAGATATGTGCCAGATGAGACCAACTTATAGCTTGTGACCAAAGCAATAAGGCACCTTCAAAACTGCATTAGCATTTTAGTATCAAATCTGTAATCTACCTGGCTGTAAGCTATTATATCAGAGCTATTATACGCTTAATAATGCGATAATTAGAAATAAATACCAAGCTGAGGTGAGGCCTTGTTATTTGTCCAGTTAGCCGTTATGCTCATTATTCAGTATTTCACAATTATAAGCTTAAGAATAAATTCAATAATTGTTTCCGGTGTGACCCAACaaaaataaagcatattatttTCTCAATATCTTGTCATGTGTTTCCTTGTGTTTTAGTTCAATAGGATTTATGCCAGAAGGAAATCTATAAGAAGATGGCCTTTAACAAGTAGCCCAGTTCATAAGCAACAGACTCATTTCTGAAATTGAATGCATTTATGAAGAAACATAGTCCAAATAATAGTTGGATTAGGTGATgtccatttgtttttgtttggctgGTCCACCTATTATtgtcaatattaattttttttgtttcctcGTATGACAGTTACATTCCTAAGCTCCGCCTAATTGCATGGATGTTGTAATTGGGAAATGTATCAGATACTAGACAGAATATAAAGCCAGAGAGAGTCCTAATGGGAACAACAGCAAGGCAGTAGGTGCTTGTCTACAACAACATGATCTGGATCATTAGCTTTTTGGCTTTTGTGGCTTCCACTCtgggtgagtttttttttttattattattattattttgatttaaatatgtaattaaaaaagtataatgtacagTGAATACAAATCCATACAAAGACTCCAAAAAACACCACAGTAAACAAATTATGTAGTGTAAACACAAAAAGTCGACTCAACTTAATATTATAAGGCAacttgctgctgtttttttttagttgacttgactcaacttttaacccaagtACTATTGTTTACTCGATTTAGGTtgagtcaacaaaaaaaaaaactgcagcaagttgccttacaattttaggttgagtcaatgttttttttttacagtaatgagCTGTGATATTTGGATTCTTATTTGTCTCATTTTAAACTTTGTTAATAGGTTGTGGTGTGCGTCAGCCATTAGGTTGGGCTGCTAAAGAATCAACCACTAAAAAACCTATTGATGGAGACATTCATGAAGGTATAATGCAGGGAGTGGATGCTCTGCGTTGGCCCTGGCAGGTTTCTATCAAGGTAAAGTTGTTTAAATACAAAATGACTGTTAAAAGTTTGTCATTTTAATTCCCTACTAATGGAATTCTCAATATTTAAACCAGACATCCAGTGGCGAGCATTTATGTGGAGGCTCTCTGATCAACAAATTTTGGGTCCTCACTGCTGCCCACTGTCAAATTCAGTaagaatctgtgtgtgtgtgcatgtttctcAAGTTAGGGTTTGGTTTTTAGATTACtgcataatgacatgggtattatTTAGTTATgctctattaaggtggtttaaatgtattatctcccTGTAAttgaaaatgcttaaaaatcatatttaacaggATCTTACGACATTCAAAATTAGCAACATTTTgcaagggttgggtttagaggtagggccatataataaataatttttac
>TCONS_00018549
GCTTCTGCCTCTGAGTCCGGCAGCGCAGGAGTGCAACAGGCACCAGGACGAGCTGAGGGGGCGAAAAGACATTCATTACAATCCGTTATCTCTCAGGAAGAACTTTTACATTAAGACAGGATGTCAAAAGGTCCAGCAGTGGGTATTGATCTGGGCACCACCTACTCATGTGTGGGAATCTTCCAGCATGGAAAGGTGGAGATCATCGCCAATGACCAGGGAAACAGAACGACCCCCAGCTACGTCGCTTTCACGGACACCGAAAGACTGATCGGAGATGCAGCCAAGAACCAAGTTGCCATGAACCCTTCTAACACTGTGTTTGATGCCAAGCGCCTGATTGGACGACGCTTTGATGACCCAGTGGTTCAATCTGACATGAAGCACTGGCCCTTTAAGGTAATCAGTGACGGCAGCAAGCCCAAAATGGAAGTGGAGTACAAAGGAGAGATAAAGACTTTCTTCCCTGAAGAGGTGTCCTCCATGGTCCTCACTAAGATGAAGGAGATCTCCGAAGCTTACCTTGGCAAGACTGTATCAAATGCAGTGATTACGGTGCCTGCTTACTTTAATGACTCCCAGCGCCAAGCCACCAAAGATGCTGGAACCATCGCTGGCCTTAATGTCCTTCGCATCATCAACGAACCAACAGCAGCTGCTATTGCATATGGATTGGACAAAAAGGTCGGTGGTGAGCGCAATGTCCTCATCTTTGATTTGGGTGGTGGCACCTTTGACGTGTCCATTCTGACCATCGAGGATGGCATTTTTGAGGTCAAGTCAACAGCAGGTGACACCCATTTGGGTGGTGAGGACTTCGACAACCGCATGGTCAACCACTTCATCACCGAGTTCAAGCGCAAGTTCAAGAAAGACATCACTGGCAATAAACGTGCTGTCCGTCGCCTGCGGACAGCATGTGAGCGTGCCAAGCGCACCCTTTCATCCAGCACACAGGCCAGCATTGAGATCGACTCTCTGTATGAAGGTGCTGACTTCTACACTTCCATCACCAGAGCCCGTTTTGAGGAGCTCAATGCTGACCTGTTTCGCGGTACACTGGAGCCAGTGGAAAAGGCTCTGCGGGATGCCAAGATGGATAAGGCACAGATCCATGACATTGTGCTGGTTGGTGGCTCCACTCGTATTCCCAAGATCCAAAAGCTGCTTCAGGACTTCTTTAATGGGCGAGATCTTAACAAGAGCATCAACCCTGATGAAGCCGTAGCTTATGGAGCTGCTGTCCAGGCAGCCATCTTAACAGGTGATACATCAGAGAATGTGCAAGACTTGTTGCTGCTGGACGTCACTCCTCTCTCTCTGGGCATTGAGACAGCAGGTGGTGTCATGACCGTGCTAATTAAGAGGAACACCACCATTCCCACTAAGCAAACCCAAACCTTTACCACCTACTCAGACAACCAGCCGGGTGTACTCATCCAGGTATATGAGGGAGAGAGAGCCATGACAAAGGACAACAACATTCTTGGCAAATTTGAGTTGACCGGCATCCCTCCTGCTCCTCGTGGTGTGCCACAGATTGAAGTTACCTTTGACATTGACGCCAATGGCATTCTCAACGTATCCGCAGTAGACAAAAGCACTGGCAAAGAGAACAAGATCACTATTACCAATGACAAAGGTCGTTTGAGCAAGGAAGACATAGAGCGTATGGTACAAGAGGCTGACCAATACAGAGCAGAGGATGAAGTACAGAGGGAAAAGGTCACCGCCAAGAACACTCTGGAGTCCTTGGCCTTTAACATGAAGAGCACTGTTGAGGACGACAAGTTGCAGGACAAGATCAGTCCAGAGGACAAGAAAACTATTACTGACAAATGCAATGAGGTCATCTCATGGCTGGACAAGAACCAGACCGCAGAAAAAGATGAGTACGAGCATCAACAGAAGGAGCTGGAAAAAGTGTGCAACCCCATCATCACTAAGCTCTATCAAGGCGCTGGTGGCATGCCAGGTGGGATGCCAGGTGGGATGCCCGGCGGTTACCCTGGAGGGCAAGGAAGTGGTTCTTCCTCTGGTCCTACCATTGAGGAAGTGGACTAACTTTTGGCACCAGAACATCCAGGCTTACACAAAGAAAGAAACCAAACACTCTGCAGCATGTCAAACAGGCTTCTTTTCAAATAGCATTTACTCACATTGGTCAGATATGTGCCAGATGAGACCAACTTATAGCTTGTGACCAAAGCAATAAGGCACCTTCAAAACTGCATTAGCATTTTAGTATCAAATCTGTAATCTACCTGGCTGTAAGCTATTATATCAGAGCTATTATACGCTTAATAATGCGATAATTAGAAATAAATACCAAGCTGAGGTGAGGCCTTGTTATTTGTCCAGTTAGCCGTTATGCTCATTATTCAGTATTTCACAATTATAAGCTTAAGAATAAATTCAATAATTGTTTCCGGTGTGACCCAACaaaaataaagcatattatttTCTCAA

Function

symbol description
si:dkey-238d18.3 Predicted to enable serine-type endopeptidase activity. Predicted to be involved in proteolysis. Orthologous to human CTRL (chymotrypsin like).

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1221 Predicted to enable several functions, including ATP binding activity; ATP hydrolysis activity; and misfolded protein binding activity. Predicted to be involved in several processes, including cellular response to unfolded protein; chaperone cofactor-dependent protein refolding; and protein refolding. Predicted to be active in cytosol; nucleus; and plasma membrane. Is expressed in myotome. Orthologous to human HSPA2 (heat shock protein family A (Hsp70) member 2).
ZDB-GENE-131127-38 Predicted to enable serine-type endopeptidase activity. Predicted to be involved in proteolysis. Orthologous to human CTRL (chymotrypsin like).

Ensembl:

ensembl_id ENSDARG00000012381 ENSDARG00000088893

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018546 False 1137 mRNA 0.38 3 37831604 37834433
TCONS_00018547 False 1090 mRNA 0.43 7 37831815 37835638
TCONS_00018548 False 3676 mRNA 0.43 8 37834594 37846047
TCONS_00018549 True 2469 mRNA 0.48 9 37835916 37850969

Neighbor

gene id symbol gene type direction distance location
XLOC_009441 ctrl coding downstream 2444 37820258 ~ 37829160 (-)
XLOC_009440 si:dkey-42l23.1 coding downstream 24581 37806111 ~ 37807023 (-)
XLOC_009439 si:dkey-42l23.2 coding downstream 32108 37795286 ~ 37799496 (-)
XLOC_009438 si:dkey-42l23.3 coding downstream 51626 37778574 ~ 37779978 (-)
XLOC_009437 si:dkey-42l23.9 coding downstream 57060 37773126 ~ 37774544 (-)
XLOC_009443 si:dkey-238d18.4 coding upstream 3514 37854483 ~ 37875601 (-)
XLOC_009444 CR944667.3 coding upstream 25747 37876716 ~ 37880887 (-)
XLOC_009445 si:dkey-238d18.5 coding upstream 40076 37891045 ~ 37921998 (-)
XLOC_009446 si:dkey-238d18.15 coding upstream 76980 37927949 ~ 37929135 (-)
XLOC_009447 si:dkey-238d18.6 coding upstream 157533 38008502 ~ 38009344 (-)
XLOC_009432 CR848836.1 non-coding downstream 102438 37727834 ~ 37729166 (-)
XLOC_009422 CR848749.2 non-coding downstream 567339 37259354 ~ 37264265 (-)
XLOC_009420 AL953844.1 non-coding downstream 957238 36874251 ~ 36874366 (-)
XLOC_009419 NA non-coding downstream 1046831 36784479 ~ 36784773 (-)
XLOC_009416 NA non-coding downstream 1328415 36500206 ~ 36503189 (-)
XLOC_009453 NA non-coding upstream 445188 38296157 ~ 38297734 (-)
XLOC_009455 NA non-coding upstream 574579 38425548 ~ 38425845 (-)
XLOC_009456 NA non-coding upstream 696858 38547827 ~ 38550804 (-)
XLOC_009457 NA non-coding upstream 1050964 38901933 ~ 38910271 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000352_00558495_00562831 HSC70, HSPA8, HSPA1A, HSPA1A.L, HSP70, HSP70-3 coding CI01000352 null 558495 ~ 562953 (-)
bowfin (Amia calva) AMCG00015183 hsc70,LOC108441346,LOC103045816,LOC108241987,LOC107675864,LOC107745199 coding CM030132.1 CM030132.1 4198486 ~ 4213829 (+)