RNA id: TCONS_00018549


Basic Information

Item Value
RNA id TCONS_00018549
length 2469
RNA type mRNA
GC content 0.48
exon number 9
gene id XLOC_009442
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 37831604 ~ 37850969 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTTCTGCCTCTGAGTCCGGCAGCGCAGGAGTGCAACAGGCACCAGGACGAGCTGAGGGGGCGAAAAGACATTCATTACAATCCGTTATCTCTCAGGAAGAACTTTTACATTAAGACAGGATGTCAAAAGGTCCAGCAGTGGGTATTGATCTGGGCACCACCTACTCATGTGTGGGAATCTTCCAGCATGGAAAGGTGGAGATCATCGCCAATGACCAGGGAAACAGAACGACCCCCAGCTACGTCGCTTTCACGGACACCGAAAGACTGATCGGAGATGCAGCCAAGAACCAAGTTGCCATGAACCCTTCTAACACTGTGTTTGATGCCAAGCGCCTGATTGGACGACGCTTTGATGACCCAGTGGTTCAATCTGACATGAAGCACTGGCCCTTTAAGGTAATCAGTGACGGCAGCAAGCCCAAAATGGAAGTGGAGTACAAAGGAGAGATAAAGACTTTCTTCCCTGAAGAGGTGTCCTCCATGGTCCTCACTAAGATGAAGGAGATCTCCGAAGCTTACCTTGGCAAGACTGTATCAAATGCAGTGATTACGGTGCCTGCTTACTTTAATGACTCCCAGCGCCAAGCCACCAAAGATGCTGGAACCATCGCTGGCCTTAATGTCCTTCGCATCATCAACGAACCAACAGCAGCTGCTATTGCATATGGATTGGACAAAAAGGTCGGTGGTGAGCGCAATGTCCTCATCTTTGATTTGGGTGGTGGCACCTTTGACGTGTCCATTCTGACCATCGAGGATGGCATTTTTGAGGTCAAGTCAACAGCAGGTGACACCCATTTGGGTGGTGAGGACTTCGACAACCGCATGGTCAACCACTTCATCACCGAGTTCAAGCGCAAGTTCAAGAAAGACATCACTGGCAATAAACGTGCTGTCCGTCGCCTGCGGACAGCATGTGAGCGTGCCAAGCGCACCCTTTCATCCAGCACACAGGCCAGCATTGAGATCGACTCTCTGTATGAAGGTGCTGACTTCTACACTTCCATCACCAGAGCCCGTTTTGAGGAGCTCAATGCTGACCTGTTTCGCGGTACACTGGAGCCAGTGGAAAAGGCTCTGCGGGATGCCAAGATGGATAAGGCACAGATCCATGACATTGTGCTGGTTGGTGGCTCCACTCGTATTCCCAAGATCCAAAAGCTGCTTCAGGACTTCTTTAATGGGCGAGATCTTAACAAGAGCATCAACCCTGATGAAGCCGTAGCTTATGGAGCTGCTGTCCAGGCAGCCATCTTAACAGGTGATACATCAGAGAATGTGCAAGACTTGTTGCTGCTGGACGTCACTCCTCTCTCTCTGGGCATTGAGACAGCAGGTGGTGTCATGACCGTGCTAATTAAGAGGAACACCACCATTCCCACTAAGCAAACCCAAACCTTTACCACCTACTCAGACAACCAGCCGGGTGTACTCATCCAGGTATATGAGGGAGAGAGAGCCATGACAAAGGACAACAACATTCTTGGCAAATTTGAGTTGACCGGCATCCCTCCTGCTCCTCGTGGTGTGCCACAGATTGAAGTTACCTTTGACATTGACGCCAATGGCATTCTCAACGTATCCGCAGTAGACAAAAGCACTGGCAAAGAGAACAAGATCACTATTACCAATGACAAAGGTCGTTTGAGCAAGGAAGACATAGAGCGTATGGTACAAGAGGCTGACCAATACAGAGCAGAGGATGAAGTACAGAGGGAAAAGGTCACCGCCAAGAACACTCTGGAGTCCTTGGCCTTTAACATGAAGAGCACTGTTGAGGACGACAAGTTGCAGGACAAGATCAGTCCAGAGGACAAGAAAACTATTACTGACAAATGCAATGAGGTCATCTCATGGCTGGACAAGAACCAGACCGCAGAAAAAGATGAGTACGAGCATCAACAGAAGGAGCTGGAAAAAGTGTGCAACCCCATCATCACTAAGCTCTATCAAGGCGCTGGTGGCATGCCAGGTGGGATGCCAGGTGGGATGCCCGGCGGTTACCCTGGAGGGCAAGGAAGTGGTTCTTCCTCTGGTCCTACCATTGAGGAAGTGGACTAACTTTTGGCACCAGAACATCCAGGCTTACACAAAGAAAGAAACCAAACACTCTGCAGCATGTCAAACAGGCTTCTTTTCAAATAGCATTTACTCACATTGGTCAGATATGTGCCAGATGAGACCAACTTATAGCTTGTGACCAAAGCAATAAGGCACCTTCAAAACTGCATTAGCATTTTAGTATCAAATCTGTAATCTACCTGGCTGTAAGCTATTATATCAGAGCTATTATACGCTTAATAATGCGATAATTAGAAATAAATACCAAGCTGAGGTGAGGCCTTGTTATTTGTCCAGTTAGCCGTTATGCTCATTATTCAGTATTTCACAATTATAAGCTTAAGAATAAATTCAATAATTGTTTCCGGTGTGACCCAACaaaaataaagcatattatttTCTCAA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1221 Predicted to enable several functions, including ATP binding activity; ATP hydrolysis activity; and misfolded protein binding activity. Predicted to be involved in several processes, including cellular response to unfolded protein; chaperone cofactor-dependent protein refolding; and protein refolding. Predicted to be active in cytosol; nucleus; and plasma membrane. Is expressed in myotome. Orthologous to human HSPA2 (heat shock protein family A (Hsp70) member 2).

Ensembl:

ensembl_id ENSDART00000031418

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018545 lncRNA downstream 6759 37827385 ~ 37829157 (-) True XLOC_009441
TCONS_00019219 lncRNA downstream 102041 37731055 ~ 37733875 (-) True XLOC_009433
TCONS_00018519 lncRNA downstream 571651 37259354 ~ 37264265 (-) True XLOC_009422
TCONS_00018840 lncRNA downstream 1051143 36784479 ~ 36784773 (-) True XLOC_009419
TCONS_00019218 lncRNA downstream 1332727 36500206 ~ 36503189 (-) True XLOC_009416
TCONS_00018553 lncRNA upstream 25747 37876716 ~ 37880887 (-) False XLOC_009444
TCONS_00018552 lncRNA upstream 25747 37876716 ~ 37880887 (-) True XLOC_009444
TCONS_00019220 lncRNA upstream 445188 38296157 ~ 38297734 (-) True XLOC_009453
TCONS_00018841 lncRNA upstream 574579 38425548 ~ 38425845 (-) True XLOC_009455
TCONS_00019221 lncRNA upstream 696858 38547827 ~ 38550804 (-) True XLOC_009456
TCONS_00018547 mRNA downstream 278 37831815 ~ 37835638 (-) False XLOC_009442
TCONS_00018546 mRNA downstream 1483 37831604 ~ 37834433 (-) False XLOC_009442
TCONS_00018544 mRNA downstream 6756 37820258 ~ 37829160 (-) False XLOC_009441
TCONS_00018543 mRNA downstream 28893 37806111 ~ 37807023 (-) True XLOC_009440
TCONS_00018542 mRNA downstream 36420 37795286 ~ 37799496 (-) True XLOC_009439
TCONS_00018550 mRNA upstream 3514 37854483 ~ 37867995 (-) False XLOC_009443
TCONS_00018551 mRNA upstream 4364 37855333 ~ 37875601 (-) True XLOC_009443
TCONS_00018554 mRNA upstream 40076 37891045 ~ 37921998 (-) False XLOC_009445
TCONS_00018555 mRNA upstream 56337 37907306 ~ 37921702 (-) False XLOC_009445
TCONS_00018557 mRNA upstream 60939 37911908 ~ 37921998 (-) False XLOC_009445
TCONS_00018535 other downstream 106750 37727834 ~ 37729166 (-) True XLOC_009432
TCONS_00018517 other downstream 961550 36874251 ~ 36874366 (-) True XLOC_009420
TCONS_00018513 other downstream 1302669 36529465 ~ 36533247 (-) True XLOC_009417
TCONS_00018488 other downstream 2623679 35167295 ~ 35212237 (-) True XLOC_009400
TCONS_00018481 other downstream 2723130 35095205 ~ 35112786 (-) False XLOC_009398
TCONS_00018590 other upstream 2218042 40069011 ~ 40069127 (-) True XLOC_009467
TCONS_00018622 other upstream 3542432 41393401 ~ 41396073 (-) True XLOC_009478
TCONS_00018633 other upstream 3678291 41529260 ~ 41543440 (-) True XLOC_009482
TCONS_00018660 other upstream 4426704 42277673 ~ 42283815 (-) True XLOC_009502
TCONS_00018661 other upstream 4677821 42528790 ~ 42528904 (-) True XLOC_009503

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000352_00558495_00562831.mRNA True 1877 mRNA 0.48 7 CI01000352 558495 ~ 562953 (-)
bowfin (Amia calva) AMCG00015183 True 2393 mRNA 0.54 9 CM030132.1 4198486 ~ 4213829 (+)