RNA id: TCONS_00019219


Basic Information

Item Value
RNA id TCONS_00019219
length 2821
lncRNA type sense_over
GC content 0.36
exon number 1
gene id XLOC_009433
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 37731055 ~ 37733875 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CATCTCAAAGTAGTTGTCAACAGGGATTTAGAAACAGCCCATTTATGAGAAGTGGTATTGAGTCATCTGAGCGAGACACGGGTTCCATCTGTGAGGCATTGTGAAGTGCGGGGTAAAGGGTTTGGCAGGTAAGTTGTTCCTTGACGGCATATTTGTAACTACCCATGTATGTTTGATATTAAGTCTGTGATGTTGTTAATGACCCGCGATCGACTGCTTTAGTTAAGTTTACTAAGCTTTAGTTTCCGTGTGAAACAACAGTGAAAGTTCTGGCATCGGCATCGCGGCTAATCCCGATGTCATCGTTGGCATCTTGTTGTGTTTGATTATGATTCAGTGTACTATATTCCACATTTGTTATGCCTTATGCTGTCACACGTCCTTTATATAATGCAGCTTTTGTAATCTATGTCAATTTTCTGTTTACACCCAGCATACATTAGTCTGCTGACTGCACTTTAAGAGAGCTGCAAATACTGTATTGTTTGTAACGGGGATATTTATTGTGTCAGTACATAAACATTTTTTgtgtttgatattttattaattacttatACTTATTGTTCATCGCAGAAAACTACCTCCTTGCTCACAATAAAAGGTGGAAAATATCTCCTGACTCCTACTCCTTAATCAGAGTGCTGAAGTGGTCAGCAACATTGAAGAACCGACATGCTAAATTAAGCAATACCCAACAGCATATATTTGCTGAGGACCATATTTAGTTTTATCAGTCAATAGGGATGTACCAGGGTTGCTCTGGTAGAAAACCAACTATCTGTTACCATAAACAAGAAGACGGAACAAGATCAAGACTCGACTCTTTCCACTGCATTGACACCTCAACATGGGTAAGATTTTAATATCTATCATGCATATTACATGTTTATGGAAACTTTTCAGAATATAAATACAAGATTGTTTATAACACAGACAATGCACAGAGATAATGTAAAATCCATATAATTAAGCACAAGATACACATTTACTTTGTCAAACAAATGACCCTTCATACAAAGATGTGCTTCTAATGAATCCACACACTGCAAATGCAAAATTATTCAATATAAAAGACTAATTATTGGTTTTATTCTAATgaggttttattaaaatgtttgagaGGAGCATGATCAGATATACTCTAATAGCTAATAGTTCAGAAATTTGCAGCACAATGACACACTGACAGTCCTTTCTGTGTTCCCTTGTTTAGAAAACAGCAGTTTTGGGCTTAAAAATGTGACTGGAAACTCAACAGACAAGAGCACTGTGGATAACAAGggatttgatattttttttgccTGCATTTTCACTGTAACCGTGGTAGTGGGTGTCATTGGAAATGGGCTGGTCATATTTCTGGCCGGCTGCAGAATGAAGACGACTGTCAACTCCATTTGGTTTCTGAATTTGGCGATTACAGACTTcatcttttttttactttcaatCACAAATTATTTCTTAATCGTGAGTAATCAGCACAGTGTCTTCACAGGCAGCCTTTTTAGCATTTCATTTACACAAAATGTGTTTGTTAGCGTTTGGACTCTTGTAGTTATTAGTCTGGATCGATGCCTGTGCACATGGATGGCTGTTTGGGCTCAAAATAACAGAACTTTGCGTAAAGCCAGAATCATCTGCATCATCATCTTTGTTTCATCCATAGTCTACATTTTACCTTACTTCAACCTTTTTGAGACTACATTTACAATTCGTGCCACATATGGATTTATATTGTCCTTTCTCATCCCCTTCCTGATCATTGCATCTTCATACATCGCTATTGGAGTAAAAATCAATCGCCTCAAAAAGAGGAAGCAGCTCAAGCCATACAGACTCATTATAACTGTAATCCTGACTTTCTTCATCTGTTCATTTccacaacatgtttgctatttTTTGATGGCAAAAGCAGAAAAGAATAATTGGACTCTCCCTTATCAGTTTTggaacatatttatttttactctctACCTGGTTAATCTCAACAACAGTCTGAACCCATTTCtctatgtgttcatgtgtgatgaTTATAAGAAGAAGCTGAAACAATCTCTGCTGCTGGTGCTGGAGACGGCGTTTGCTGAAGATCATCTGGACATTAAAGATATAAGACAGACACAAACAGATGAGCAAGAGATGAAAACCACACATGAATTGCTAAAAAtgtagaatctttttttttttttggggggggggggggggggatcttTTAAATCATTGCTAATACTGCATATAATTATCACAGTTAAACAGTAACTGTCATCTGTATTTAGCATAATTTTCTGTCTAAGACATCTCTTGTAAATTATAGATTTATAAATCCAGGTTTTGTGCTTGGTTTAGTTTTGTGTTCTTGTTTTCAGTGTCTGTATATTCACTTAGGGCTGATTTCATTGTTTAGTTCAGTGTGTGTATTTAAGTCTCAGTCTGtttttgtagaattttttttgaCGTTGACCTGTTTGTctattttattagattaaaagCATTGCTGTGTGcataatttatttctattttctttAATCAGTACTAACACTTTGTTTATTAGTCGGATGACCAGTTATGGATTTTTTATGATATCGGCTAAATAGTTAAAgtcattttaaagcttttttgtttaagtcttgttaattcttgtttagGTGGCAGATTCCAGACACTAGTTGTGTCATGTTTCAAATGTTGTAATCTCTCTTTCATGTCTGTCATGCCAAATCCTGTCAAGCCTAGTATGAGTGTGTATTAATGCTGTTTTTCCCCAGGAATGTTTcagttgttttgctttgtttttggaaaataaaatccTTCATTTCTGCAA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007200 phospholipase C-activating G protein-coupled receptor signaling pathway biological_process
GO:0007204 positive regulation of cytosolic calcium ion concentration biological_process
GO:0006954 inflammatory response biological_process
GO:0002430 complement receptor mediated signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004875 complement receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018519 lncRNA downstream 466790 37259354 ~ 37264265 (-) True XLOC_009422
TCONS_00018840 lncRNA downstream 946282 36784479 ~ 36784773 (-) True XLOC_009419
TCONS_00019218 lncRNA downstream 1227866 36500206 ~ 36503189 (-) True XLOC_009416
TCONS_00018839 lncRNA downstream 1293209 36421591 ~ 36437846 (-) True XLOC_009415
TCONS_00018510 lncRNA downstream 1361369 36365724 ~ 36369686 (-) True XLOC_009414
TCONS_00018545 lncRNA upstream 93510 37827385 ~ 37829157 (-) True XLOC_009441
TCONS_00018553 lncRNA upstream 142841 37876716 ~ 37880887 (-) False XLOC_009444
TCONS_00018552 lncRNA upstream 142841 37876716 ~ 37880887 (-) True XLOC_009444
TCONS_00019220 lncRNA upstream 562282 38296157 ~ 38297734 (-) True XLOC_009453
TCONS_00018841 lncRNA upstream 691673 38425548 ~ 38425845 (-) True XLOC_009455
TCONS_00018532 mRNA downstream 11376 37707269 ~ 37719679 (-) False XLOC_009431
TCONS_00018534 mRNA downstream 12040 37717259 ~ 37719015 (-) True XLOC_009431
TCONS_00018533 mRNA downstream 21983 37707914 ~ 37709072 (-) False XLOC_009431
TCONS_00018531 mRNA downstream 47287 37682403 ~ 37683768 (-) True XLOC_009430
TCONS_00018529 mRNA downstream 56935 37649289 ~ 37674120 (-) False XLOC_009429
TCONS_00018537 mRNA upstream 7507 37741382 ~ 37743613 (-) True XLOC_009434
TCONS_00018538 mRNA upstream 17238 37751113 ~ 37752236 (-) True XLOC_009435
TCONS_00018539 mRNA upstream 32222 37766097 ~ 37767901 (-) True XLOC_009436
TCONS_00018540 mRNA upstream 39251 37773126 ~ 37774544 (-) True XLOC_009437
TCONS_00018541 mRNA upstream 44699 37778574 ~ 37779978 (-) True XLOC_009438
TCONS_00018535 other downstream 1889 37727834 ~ 37729166 (-) True XLOC_009432
TCONS_00018517 other downstream 856689 36874251 ~ 36874366 (-) True XLOC_009420
TCONS_00018513 other downstream 1197808 36529465 ~ 36533247 (-) True XLOC_009417
TCONS_00018488 other downstream 2518818 35167295 ~ 35212237 (-) True XLOC_009400
TCONS_00018481 other downstream 2618269 35095205 ~ 35112786 (-) False XLOC_009398
TCONS_00018590 other upstream 2335136 40069011 ~ 40069127 (-) True XLOC_009467
TCONS_00018622 other upstream 3659526 41393401 ~ 41396073 (-) True XLOC_009478
TCONS_00018633 other upstream 3795385 41529260 ~ 41543440 (-) True XLOC_009482
TCONS_00018660 other upstream 4543798 42277673 ~ 42283815 (-) True XLOC_009502
TCONS_00018661 other upstream 4794915 42528790 ~ 42528904 (-) True XLOC_009503

Expression Profile

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