RNA id: TCONS_00018539


Basic Information

Item Value
RNA id TCONS_00018539
length 1443
RNA type mRNA
GC content 0.39
exon number 2
gene id XLOC_009436
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 37766097 ~ 37767901 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTTAGTCAATAGGGATGTACCAGGGTTTGCTCTGGTATAAAACCAACTATCGGTCAGCACAAACAAGAAGACGGAACAAGATCAAGACTCGACTCCTTCCACTGCATCTCAAAAACATGGAAAACAGCAGTTTTGGGCTTAAAAATGTGACTGGAAACTCAACAGACAAGAATACTGTGGAGGATGAGGGATTTAAGATTTTTCTTGCCTGCATTTTATCTGTAACCTTTGTAGTGGGTCTCATTGGAAATGGTCTAGTCATATTTCTGACCggctgcagaatgaaaatgacTGTCAACTCCACTTGGTTTTTGAATTTGGCGATTGCAGACTTCAtcttcattttaatttcaatCACAAATTTTTCCTTAAAGTGGAGCAAGCAGCACAGTGACTTCACAGAGTACTTTTTTATCATCACAACATCTCTAAATCTGTTTATTAGTGTTTGGTCTCTTGTAGTTATCAGTCTGGATCGATGTCTGTGCACATGGATGCCTGTTTGGGCTCAAAATAACAGAACTCTGCGTAAAGCCAGAATCATCTGCATCATCATCTGGGTTTCATCCATCGGCTACATTTTACCGTACTTCAAAGTTTTTAACATTACAGATACAATTATTGTCACATATGAATTTATAGTGGTCTTTTTCATCACCTTCCTGATCATTACATCTTCATACATCGCTATTGGAGTAAAAATCAATCGCCTCAAAATGGGGAAGCAGCTCAGGTCATACAGACTCATTATAACTGTAATCCTGACCTTCTTCATCTGTTCATTTCCACACCATGTTTGCTGGATTTTGAGAATAAGGGCAAACAATAATAATTGGACTCTCACTAAACAATTTTGGATGCTATTTGATTTTACTTTCTACCTGATTAATCTTAACAGCAGTTTGAATCCATTTCTCTATGTGTTCATGAGTAAGGATTATAAGAAGAAGCTGAAACAGTCTCTGGTGCTGGTGCTAGAGACGGCATTTACTGAAGGTCATTTGGACGTTAAAGAAATGAGACAGACACACCACACTTGAATTGCTAGAAATGTAGAAAACTATCTGGGGGGGTCTGTCTTCATTGAGGTTTGTGTCCTTCATCTAACTTTATTCAATTAAAAGCACTgattttctgtcattgtgtgtctctgTATGAGTGCTGTCGTGATCACGCTTGGGCTGTGCACGCTCCTGTGTAATGAGGGCGCGCGAGGTCTGGATTTGCACTCTTGTCCtggtgtctgtgtttgttttgtctgcagCATGATCAGTAACAATTTCTTTTATGAACAAAAGTACCAcataagtacagtgaaataacagtGTACTTTGCTGTACAAATAATATAAGTATAAagatgtgtaggtataagggaacaaactgtaatgcttcgTTTTACTCTGCGTTGTGTTTAGGTGAACAGAACCAGTCATATGGGAG

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007200 phospholipase C-activating G protein-coupled receptor signaling pathway biological_process
GO:0007204 positive regulation of cytosolic calcium ion concentration biological_process
GO:0006954 inflammatory response biological_process
GO:0002430 complement receptor mediated signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004875 complement receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131127-534 Predicted to enable G protein-coupled receptor activity and complement receptor activity. Predicted to be involved in several processes, including complement receptor mediated signaling pathway; phospholipase C-activating G protein-coupled receptor signaling pathway; and positive regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human GPR33 (G protein-coupled receptor 33).

Ensembl:

ensembl_id ENSDART00000154763

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019219 lncRNA downstream 32222 37731055 ~ 37733875 (-) True XLOC_009433
TCONS_00018519 lncRNA downstream 501832 37259354 ~ 37264265 (-) True XLOC_009422
TCONS_00018840 lncRNA downstream 981324 36784479 ~ 36784773 (-) True XLOC_009419
TCONS_00019218 lncRNA downstream 1262908 36500206 ~ 36503189 (-) True XLOC_009416
TCONS_00018839 lncRNA downstream 1328251 36421591 ~ 36437846 (-) True XLOC_009415
TCONS_00018545 lncRNA upstream 59484 37827385 ~ 37829157 (-) True XLOC_009441
TCONS_00018553 lncRNA upstream 108815 37876716 ~ 37880887 (-) False XLOC_009444
TCONS_00018552 lncRNA upstream 108815 37876716 ~ 37880887 (-) True XLOC_009444
TCONS_00019220 lncRNA upstream 528256 38296157 ~ 38297734 (-) True XLOC_009453
TCONS_00018841 lncRNA upstream 657647 38425548 ~ 38425845 (-) True XLOC_009455
TCONS_00018538 mRNA downstream 13861 37751113 ~ 37752236 (-) True XLOC_009435
TCONS_00018537 mRNA downstream 22484 37741382 ~ 37743613 (-) True XLOC_009434
TCONS_00018536 mRNA downstream 32859 37731055 ~ 37733238 (-) False XLOC_009433
TCONS_00018532 mRNA downstream 46418 37707269 ~ 37719679 (-) False XLOC_009431
TCONS_00018540 mRNA upstream 5225 37773126 ~ 37774544 (-) True XLOC_009437
TCONS_00018541 mRNA upstream 10673 37778574 ~ 37779978 (-) True XLOC_009438
TCONS_00018542 mRNA upstream 27385 37795286 ~ 37799496 (-) True XLOC_009439
TCONS_00018543 mRNA upstream 38210 37806111 ~ 37807023 (-) True XLOC_009440
TCONS_00018544 mRNA upstream 52357 37820258 ~ 37829160 (-) False XLOC_009441
TCONS_00018535 other downstream 36931 37727834 ~ 37729166 (-) True XLOC_009432
TCONS_00018517 other downstream 891731 36874251 ~ 36874366 (-) True XLOC_009420
TCONS_00018513 other downstream 1232850 36529465 ~ 36533247 (-) True XLOC_009417
TCONS_00018488 other downstream 2553860 35167295 ~ 35212237 (-) True XLOC_009400
TCONS_00018481 other downstream 2653311 35095205 ~ 35112786 (-) False XLOC_009398
TCONS_00018590 other upstream 2301110 40069011 ~ 40069127 (-) True XLOC_009467
TCONS_00018622 other upstream 3625500 41393401 ~ 41396073 (-) True XLOC_009478
TCONS_00018633 other upstream 3761359 41529260 ~ 41543440 (-) True XLOC_009482
TCONS_00018660 other upstream 4509772 42277673 ~ 42283815 (-) True XLOC_009502
TCONS_00018661 other upstream 4760889 42528790 ~ 42528904 (-) True XLOC_009503

Expression Profile

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