XLOC_009431 (si:dkey-117a8.1)


Basic Information

Item Value
gene id XLOC_009431
gene name si:dkey-117a8.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 37707269 ~ 37719679 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018532
TGCAATCAAGGCGCAGGGCGCACCTCAAACGAGTTTGCAAGGGTGATTTAGACACAGCCCAAATGTGAGAAGTGGTATATGTTGAGTCATCTGAGTGAGCCGCTGTTTCCATCCGTAAGCCATTGTGAAGTGCAGGGTAAAGTTGTTGGCAAGTAAGTTTGTTCCTTGACGGTATGTTTGTAATTTTGTATGTTTGATAGGCTATGAAGTCTGTGATGTTGTTAATGAACCGCGATCGACCGCGAACTTTGGTTTCCGTGTGAAAAAGTGAAAGCTCTAGCATCGGCATTGCGGCTAATCCCGATATCATCGTTGGCATCTTGTGTTTGATTACAATAACAGTGTACTATATTGCACATTTGTTTGCCTTATGCTGTCGCACGTCCTTTATATAATGCTGCTTTAGTCATTAATGTCCATTTATAATCTGTTTACACCACTGTTACATCTGTTACATTAGTCTGCTGACTGCACTTTCAGAGAGTTGTAAACACTGTATTGTTTGTAACGGGATATTTATGTTGTCAGTACATAAATATTTTTCatgtttgatatttttattattaatttatacttATTGTTCATTACAGAAAACTACTTCCTTTTCTCACAATTAAAGGTGGAAAATATCTCCTGACTCCTACTCCTTAATCAGAGTGCTGAAGTGGTCAGCAACATTAAAGAACTGACATGCTAAATTAAGCAATACCCAACAGCAGATATTTGCTGAGGACCATATTTAGTCTTATCAGTATGTACCAGGGTTTGCTCTTGTATAAAACTTTGTCGGTCAGCACAAATAAGAAGACGGAACAAGATCAAGACTCGACTCTTTCCACTGCATTGACACCTCAACATGGAAAACAGCAGTTTTGGGCTTAAAAATGTGACTGGAAACTCAACAGACAAGAGCACTGTGGAGAAGGGATATGAGATTTTTTCTGCCTGCATTTTCTTTTCCACCATCATAGTGGGTCTCATTGGAAATGGTCTAGTCATATTTCTGGCCGGCTGCAGAATGAAGACGACTGTCAACTCCATTTGGTTTCAGAATTTAGCGATTGCAGACTTCATCTTCCTTTTATTTTCAGTTACAAATTTTTGCTTAATCTTGAGCAAGCAGCACAGTTTCTTTATAGGCCACATTCTCTTCATCACAACAGCACAAAATGTGTTTGCTAGCGTTTGGTTTCTTGTAGTTATCAGTCTGGATCGATGCCTGTGCACATGGATGACCGTTTGGGCTCAAAATAACAGAACTCTGCGTAAAGCCAAAATCATCTGCATCATCATCTGGGTTTCATCCATCGGCTACATTTTACCTTATGTCAACGTTTTTGAGGTTACTGATACAAATGTCACATATGGATTTATAGTGGACTTTCTCATCCCCTTCCTGATCATTGCATCTTCATACATCGCTATTGGAGTAAAAATCAAACGCCTTAAAATAAGGAAGCAGCTCAGGTCATACAGACTTATTATAACTGTAATTCTGATTTTCTTCATCTGTTCATTTccacaacatgtttgctatttTTTTATGCTAATGGCAAAAAATAATCATTGGACTCTTACTGATCACTTTTGGGTGCTATTTGGTATTACTCTCTACCTGGTTAATCTCAACAGCAGTCTGAACCCATTTCtctatgtgttcatgtgtgatgaTTATAAGAAGAAGCTGAAACAGTCTCTGGTGCTGGTGCTGGAGACGGCGTTTGCTGAAGATCATCTGGACATTAAAGAAATGAGACTGACACAAAATGATTAACAGGCAAAACAAACCACACTTGAATTGCTAGAAATGTAGAAAACGTTTTTGGGGAACAAAATAATTTTGCAATCATtgttaataatgtatataattacCACAGTTAAACAGTAACTGTCATCTGTATTCAGCATAATTCTCTCTCTAAGACATCTCTTGTaaattatagttttataaatCCAGGTTTTGTGCTTGGTTTAGTTTTGTGTTCTTGTTTTCAGTGTCTGTATTTTCACTTAGGGCTGTTTTTATTGCTTGGTTCAGTGTGTGTATTTAAGTCTCAGTCTGTCTTCATTGATGTTTGTGTCGTTGACCTGTTCatctattttatttgattaaaagcaTTGCTGTGtacataataattttttgattgtctgttaTCAGCACTAACACTTTATTAATTTATCAGATGACCATTACTGACCATTTGAGGATTTTTTATGATATCAGCTAAATCTTTAATTCTTCTAATGGTGGTCCAAT
>TCONS_00018533
AAGATCAGGATTTGACTCTTTCCACTGCATTGACATCTCAAAACATGGAAAACAGCAGTTTTGGGCTTAAAAATGTGACTGGAAACTCAACAGACAAGAGCACTGTGGAGAAGGGATATGAGATTTTTTCTGCCTGCATTTTCTTTTCCACCATCATAGTGGGTCTCATTGGAAATGGTCTAGTCATATTTCTGGCCGGCTGCAGAATGAAGACGACTGTCAACTCCATTTGGTTTCAGAATTTAGCGATTGCAGACTTCATCTTCCTTTTATTTTCAGTTACAAATTTTTGCTTAATCTTGAGCAAGCAGCACAGTTTCTTTATAGGCCACATTCTCTTCATCACAACAGCACAAAATGTGTTTGCTAGCGTTTGGTTTCTTGTAGTTATCAGTCTGGATCGATGCCTGTGCACATGGATGACCGTTTGGGCTCAAAATAACAGAACTCTGCGTAAAGCCAAAATCATCTGCATCATCATCTGGGTTTCATCCATCGGCTACATTTTACCTTATGTCAACGTTTTTGAGGTTACTGATACAAATGTCACATATGGATTTATAGTGGACTTTCTCATCCCCTTCCTGATCATTGCATCTTCATACATCGCTATTGGAGTAAAAATCAAACGCCTTAAAATAAGGAAGCAGCTCAGGTCATACAGACTTATTATAACTGTAATTCTGATTTTCTTCATCTGTTCATTTccacaacatgtttgctatttTTTTATGCTAATGGCAAAAAATAATCATTGGACTCTTACTGATCACTTTTGGGTGCTATTTGGTATTACTCTC
>TCONS_00018534
GTGGTCAGCAACATTAAAGAACTGACATGCTAAATTAAGCAATACCCAACAGCAGATATTTGCTGAGGACCATATTTAGTCTTATCAGTATGTACCAGGGTTTGCTCTTGTATAAAACTTTGTCGGTCAGCACAAATAAGAAGACGGAACAAGATCAAGACTCGACTCTTTCCACTGCATTGACACCTCAACATGGAAAACAGCAGTTTTGGGCTGAAATATGTGACTGGACACTCAACAGAAAAGAGCACTGTGGAGGATGAGGGATTGGGGATTTTTTTGGCCTGCATTTTCTTTTCTACCATCATAGTGGGTCTCATTGGAAATGGTCTGGTCATATTTCTGGCCGGCTGCAGAATGAAGACGACTGTCAACTCCATTTGGTTTCTGAATTTGGCGATTGCAGACTTCATCTACCTTTTATTTTCAGTCACAAATTTTTGCTTAATCTTGAGCAAGCAGCACAGTGTCTTTATAGGCCACATTCTCTTTATGACAACAGAACAAAATGTGTTTGCTAGCATTTGGTTTCTTGTAGTTATCAGTCTGGATCGATGCCTGCGCACATGGATGGCTGTTTGGGCTCAAAATAACAGAACTCTGCGTAAAGCCAGAATCATCTGCATCATCATCTGGGTTTCATCCATCGGCTACATTTCCCCTTACTTTCCTTTACTTTCCCTACTAGATGTTGAGGTTACAGGTACAAATGTCACATATGGATTTATAATGACCTTTCTCATCCCCTTCTTGATCATTGCATCTTCATACATCGCTATTGGAGTAAAAATCAATCGCCTCAAAAAGAGGAAGCAGCTCAAGCCATACAGACTCATTATAACTGTAATTCTGATTTTCTTCATCTGTTCATTTCCACAACATGTTTGCTGGTTTTGGATGGCAAGGGCAGAAAATATTAATTGGACTTTCACTGGTCACTTTTGGGTGCTATTTGGTTTTACTCTCTACCTGGTTAATCTCAACAGCAGTCTGAACCCATTTCtctatgtgttcatgtgtgatgaTTATAAGAAGAAGCTGAAACAGTCTCTGGTGCTGGTGCTGGAGACGGCGTTTGCTGAAGATCATCTGGACATTAAAGATATGAGACAGACACAAACGGATGAGCAAGAGAAGAAAACCACAATTGAATTGCTAGAAATATAGAAAActttttttggggaaaaaaatgcaaTGATTGATAATAATGCATATAATTATCACAGTTAAACAGTAACTGTCATCTGTATTTAGCATAATTGTCTGTCTAAGACATATCTTGTGaattatagttttataaatacAGGTTTTGTGCTTGATTTAGTTATGTGTCTGTAGCCGCTTTTctactatcgtgccaaaccgttctaagaacacttcagTACGGTTaaggtt

Function

symbol description
si:dkey-117a8.1 Predicted to enable G protein-coupled receptor activity and complement receptor activity. Predicted to be involved in several processes, including complement receptor mediated signaling pathway; phospholipase C-activating G protein-coupled receptor signaling pathway; and positive regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human GPR33 (G protein-coupled receptor 33).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007200 phospholipase C-activating G protein-coupled receptor signaling pathway biological_process
GO:0007204 positive regulation of cytosolic calcium ion concentration biological_process
GO:0006954 inflammatory response biological_process
GO:0002430 complement receptor mediated signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004875 complement receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-256 Predicted to enable G protein-coupled receptor activity and complement receptor activity. Predicted to be involved in several processes, including complement receptor mediated signaling pathway; phospholipase C-activating G protein-coupled receptor signaling pathway; and positive regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human GPR33 (G protein-coupled receptor 33).

Ensembl:

ensembl_id ENSDARG00000097248 ENSDARG00000097816

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018532 False 2257 mRNA 0.37 2 37707269 37719679
TCONS_00018533 False 800 mRNA 0.38 2 37707914 37709072
TCONS_00018534 True 1395 mRNA 0.39 2 37717259 37719015

Neighbor

gene id symbol gene type direction distance location
XLOC_009430 si:dkey-117a8.3 coding downstream 23501 37682403 ~ 37683768 (-)
XLOC_009429 si:ch211-137j23.6 coding downstream 33149 37649268 ~ 37674120 (-)
XLOC_009428 si:ch211-137j23.7 coding downstream 61455 37639184 ~ 37645814 (-)
XLOC_009427 si:ch211-137j23.8 coding downstream 87102 37619004 ~ 37620167 (-)
XLOC_009426 si:dkey-42l23.9 coding downstream 96835 37608742 ~ 37610434 (-)
XLOC_009432 CR848836.1 coding upstream 8155 37727834 ~ 37729166 (-)
XLOC_009433 si:dkey-42l23.7 coding upstream 11376 37731055 ~ 37733875 (-)
XLOC_009434 si:dkey-42l23.6 coding upstream 21703 37741382 ~ 37743613 (-)
XLOC_009435 si:dkey-42l23.5 coding upstream 31434 37751113 ~ 37752236 (-)
XLOC_009436 si:dkey-42l23.4 coding upstream 46418 37766097 ~ 37767901 (-)
XLOC_009422 CR848749.2 non-coding downstream 443004 37259354 ~ 37264265 (-)
XLOC_009420 AL953844.1 non-coding downstream 832903 36874251 ~ 36874366 (-)
XLOC_009419 NA non-coding downstream 922496 36784479 ~ 36784773 (-)
XLOC_009416 NA non-coding downstream 1204080 36500206 ~ 36503189 (-)
XLOC_009415 NA non-coding downstream 1269423 36421591 ~ 36437846 (-)
XLOC_009444 CR944667.3 non-coding upstream 157037 37876716 ~ 37880887 (-)
XLOC_009453 NA non-coding upstream 576478 38296157 ~ 38297734 (-)
XLOC_009455 NA non-coding upstream 705869 38425548 ~ 38425845 (-)
XLOC_009456 NA non-coding upstream 828148 38547827 ~ 38550804 (-)

Expression


Co-expression Network