XLOC_009429 (si:ch211-137j23.6)


Basic Information

Item Value
gene id XLOC_009429
gene name si:ch211-137j23.6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 37649268 ~ 37674120 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018528
AAAATGACTTGCTCCCAGTAAGAGGTGGAAAATATCTCCTGACTCCTACTCCTTAATCAGAGTGCTGAAGTGGTCAGCAACATTAAAGAACTGGCATGCTAAATTATGCATTACCCAACAGCAGATATTTGCTAATGACCATATTTAGTCTAAGCAGTCAATAGGGATGTACCAGGGTTTGCTGTGGTATAAAACCAACTATCGGTCAGCACACGCAAGAAGACGGAACAAGATCAAGACTCGACTCTTTCCACAGCATTGACACCTCAAAACATGGAAAACAGCAGTTTTGGGCTTAAAAATGTGACTGGAAACTCAACAGACAAGAGCACTGTGGAGGACAAGggatttgagattttttttgtctgtattttCTCTGTAACCTTTGTAGTGGGTCTAATTGGAAATGGTCTGGTCATATTTCTGGCCGGCTGCAGAATGAAGATGACTGTCAACTCCACTTGGTTTCTGAATTTGGCGATTGCAGACTTCATCTTCTTTTTACTTTCAATCACAAATTTTTCCTTAACCGTGAGCAATCAGCACAGTGTCTTCACAGGCGACTTTCTCTTCATCACAACAGCACAAAATGTGTTTGCTAGCGTTTGGTCTCTTGTAGTTATCAGTCTGGATCGATGTTTGTGCACATGGATGACCGCTTGGGCTCAAAATAACAGAACTCTGCGTAAAGCCAGAATCATCTGCATCATCATCTGGGTTTCATCCATCGGCTACATTTTACCCTACTTTAAAGTTTTTGAGATTACAGGTACAATTCTTGTGACTTATGGATTTATAGTGGTCTTTCTCATCCCCTTCCTGATCATTGCATCTTCATACATCGCTATTGGAGTAAAAATCAATCACCTCAAAAAGAGGAAGCAGCTCAGGTCATACAGACTCATTATAACTGTAATCCTGACTTTCTTCATCTGTTCATTTCCACAGTATGTTTGCTATTTTTGGATGGTAAGAGCAGAAAATAATAATTGGACTCTCACTGATCAATTTTGGGTGCTATTTGCTTTTGCTCTCTACCTGATTAATCTTAACAGCAGTCTGAACCCATTTCtctatgtgttcatgtgtgatgaTTATAAGAAGAAGCTGAAACAGTCTCTGGTGCTGGTGCTGGTAACGGCGTTTGCTGAAGATCATCTGGACAATAAAGGAAGGAGACAGacacaaaatgaacaaatcacACTTGAATTgctagaaatgtaaaaaaaaaatttggaggAAAAAGTTTTGCCTTCATTGTTAATACTGCATATAATTATCACAGTTGAACAGTAACTGTCATCTGCATTCATCATAATTTTCTGTCTAAGACATCTCTTGTAAATTAAAGTTTTATAAATCCAGGTTTTGTGCTTGGTTTAGTTTTGTGTTCTTGTTTTCAGTGTCTGTATATTCACTTAGGGCTGATTTCATTGTTTAGTTCAGTGTGTGTATTTAAGTCTCAGTCTGTCTTCATTGATGTTTGTGTCGTTGACCtgttcatctatttttttttattaaaagcattGCTGT
>TCONS_00018529
GCAGTTTCCATCTGTGAGGCATTGTGAGGTGCGGGTAAAGTTATTGCCAAGTAAGTTCCTTGACGACATGTTTGTAATTACCCTTGTATGTTTGATATTAAGTCTGTGATGTTGTTAATGACTCGTCATCAGCTGGCATCTTGTTTGTGTTTGATTATGATTCAGTGTCCTATATTCTACATTTGTTATGCCTTATGCTGTCACACGTCCTCTATATAATGCAGCTTTAGTCATTAATGTCCATTTATAATCTGTTTACACCCAGCATAGATTAGTCTGCTGACTGCACTTTTAAGAGAGCTGCAAATACTGTATTGTTTGTAACAGGATATTTATTGTGTCAGtacataaatatttttcattttaactcCTTGCTCACGATAAAAGGTGAAAAATATCTCCTGACTCCTACTTCTTAATCAAAGTGCTGAAGTGGTCAGCAACATTAAATAACTGGCTTGCTAAATTGGGCAATACCCAACAGCAGATATTTGCTGATGACCATATTTAGTTTTATGAGGATGTACCAGGGTTTGCTGTGGTATAAAACCAACTATCGATCTGCACACGCAAGAAGACGGAACAAGATCAAGACTTAACTCTTTCCACTGCATTGACACCTCAACATGGAAAACAGCAGTTTTGGGCTTAAAAATGTGACTGGAAACTCAACAGACAAGAGCACTGTGGAGGACAAGggatttgagattttttttgtctgtattttCTCTGTAACCTTTGTAGTGGGTCTAATTGGAAATGGTCTGGTCATATTTCTGGCCGGCTGCAGAATGAAGATGACTGTCAACTCCACTTGGTTTCTGAATTTGGCGATTGCAGACTTCATCTTCTTTTTACTTTCAATCACAAATTTTTCCTTAACCGTGAGCAATCAGCACAGTGTCTTCACAGGCGACTTTCTCTTCATCACAACAGCACAAAATGTGTTTGCTAGCGTTTGGTCTCTTGTAGTTATCAGTCTGGATCGATGTTTGTGCACATGGATGACCGCTTGGGCTCAAAATAACAGAACTCTGCGTAAAGCCAGAATCATCTGCATCATCATCTGGGTTTCATCCATCGGCTACATTTTACCCTACTTTAAAGTTTTTGAGATTACAGGTACAATTCTTGTGACTTATGGATTTATAGTGGTCTTTCTCATCCCCTTCCTGATCATTGCATCTTCATACATCGCTATTGGAGTAAAAATCAATCACCTCAAAAAGAGGAAGCAGCTCAGGTCATACAGACTCATTATAACTGTAATCCTGACTTTCTTCATCTGTTCATTTCCACAGTATGTTTGCTATTTTTGGATGGTAAGAGCAGAAAATAATAATTGGACTCTCACTGATCAATTTTGGGTGCTATTTGCTTTTGCTCTCTACCTGATTAATCTTAACAGCAGTCTGAACCCATTTCtctatgtgttcatgtgtgatgaTTATAAGAAGAAGCTGAAACAGTCTCTGGTGCTGGTGCTGGTAACGGCGTTTGCTGAAGATCATCTGGACAATAAAGGAAGGAGACAGacacaaaatgaacaaatcacACTTGAATTgctagaaatgtaaaaaaaaaatttggaggAAAAAGTTTTGCCTTCATTGTTAATACTGCATATAATTATCACAGTTGAACAGTAACTGTCATCTGCATTCATCATAATTTTCTGTCTAAGACATCTCTTGTAAATTAAAGTTTTATAAATCCAGGTTTTGTGCTTGGTTTAGTTTTGTGTTCTTGTTTTCAGTGTCTGTATATTCACTTAGGGCTGATTTCATTGTTTAGTTCAGTGTGTGTATTTAAGTCTCAGTCTGTCTTCATTGATGTTTGTGTCGTTGACCtgttcatctattttt
>TCONS_00018530
GTGAAAAATATCTCCTGACTCCTACTTCTTAATCAAAGTGCTGAAGTGGTCAGCAACATTAAATAACTGGCTTGCTAAATTGGGCAATACCCAACAGCAGATATTTGCTGATGACCATATTTAGTTTTATGAGGATGTACCAGGGTTTGCTGTGGTATAAAACCAACTATCGATCTGCACACGCAAGAAGACGGAACAAGATCAAGACTTAACTCTTTCCACTGCATTGACACCTCAACATGGAAAACAGCAGTTTTGGGCTGAAAAATGTGATTGGAGGTTTAACAGACAAGAGCACTTTGGAGATCAAGGGATTTGGGATTTTTTCTGCCTGCATTTTCTTTTCCACCATCATAGTGGGTGTCATTGGAAATGGGCTGGTCATATTTCTGGCCGGCTGCAGAATGAAGACGACTGTAAACTCCATTTGGTTTCTGAATTTGGCGATTGCAGACTTCATCTTCCTTTTATTTTCAGTCACAAATTTTTGCCTAATCTTGAGCAATCAGCACAGTGATCTCACATACATATTTATCTTCATCGCAGCATGTCTAAATCTGTTTGTTAGCGTTTGGTTTCTTGTAGTCATCAGTCTGGATCGATGCCTGTGCACATGGATGGCTGTTTGGGCTCAAAATAACAGAACTCTGCGTAAAGCCAGAATCATCTGCATCATCATCTGGGTTTCATCCATCGGCTACATTTTACCTTTCTTGAACGTTTTTGAGATTACAGTTACAATTCGTGTCACATATGGATTCATAGTGGACTTTCTCATCCCCTTCCTGACCATTGCATCTTCATACATCGCTATTGGAGTAAAAGTCAAACGCCTCAAAAAGAGGAAGCAGCTCAGGTCATACAGACTTATTATAACTGTAATCCTGACTTTCTTCATCTGTTCATTTccacaacatgtttgctatttTTGGATGGTAAGGGCAGAAAATAATAATTGGACTCTCACTGATCAATTTTGGAAGTTATTTGCTTTTACTCTCTACCTGGTTAATCTCAACAGCAGTCTGAACCCATTTCtctatgtgttcatgtgtgaGGATTATAAGAAGAAGCTGAAACAGTCTCTGGTGCTGGTGCTGGAGACGGCGTTTGCTGAAGATCATCTGGACAATAAAGAAATGAGACAGACACAAGATGATTAACAGGCAAAACAAACCACACTTGAATTGCTAAAAATGTAGAAAACCTTTTTGGGGGAAAAAGTTTTCCAACCATTGTTAATACAGTAATTATCACAGTTAAACAGTAACTGTCATCTGTATTCAGCATAATTTTCTGTCTAAAACATCTCTTGTaaattatagttttataaatCCAGGTTTTGTGCTTGGTTTAGTTTTGTGTTCTTGTTTCATTGTCTGTATATTCACTTAGGGCTGATTTCATTGTTTAGTTTGGTGTGTGTATTCAAGTCTCAGTCTGTCTTCATTGATGTTTGTGTCGTTGACCTGTTCATctattttattagattaaaagCATTGCTGT

Function

symbol description
si:ch211-137j23.6 Predicted to enable G protein-coupled receptor activity and complement receptor activity. Predicted to be involved in several processes, including complement receptor mediated signaling pathway; phospholipase C-activating G protein-coupled receptor signaling pathway; and positive regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000097698 ENSDARG00000097872

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018528 False 1533 mRNA 0.38 2 37649268 37651161
TCONS_00018529 False 1865 mRNA 0.38 2 37649289 37674120
TCONS_00018530 True 1506 mRNA 0.38 2 37671873 37673733

Neighbor

gene id symbol gene type direction distance location
XLOC_009428 si:ch211-137j23.7 coding downstream 3454 37639184 ~ 37645814 (-)
XLOC_009427 si:ch211-137j23.8 coding downstream 29101 37619004 ~ 37620167 (-)
XLOC_009426 si:dkey-42l23.9 coding downstream 38834 37608742 ~ 37610434 (-)
XLOC_009425 proser3 coding downstream 59668 37562582 ~ 37589600 (-)
XLOC_009424 kmt2bb coding downstream 105429 37457009 ~ 37543839 (-)
XLOC_009430 si:dkey-117a8.3 coding upstream 8283 37682403 ~ 37683768 (-)
XLOC_009431 si:dkey-117a8.1 coding upstream 33149 37707269 ~ 37719679 (-)
XLOC_009432 CR848836.1 coding upstream 53714 37727834 ~ 37729166 (-)
XLOC_009433 si:dkey-42l23.7 coding upstream 56935 37731055 ~ 37733875 (-)
XLOC_009434 si:dkey-42l23.6 coding upstream 67262 37741382 ~ 37743613 (-)
XLOC_009422 CR848749.2 non-coding downstream 385003 37259354 ~ 37264265 (-)
XLOC_009420 AL953844.1 non-coding downstream 774902 36874251 ~ 36874366 (-)
XLOC_009419 NA non-coding downstream 864495 36784479 ~ 36784773 (-)
XLOC_009416 NA non-coding downstream 1146079 36500206 ~ 36503189 (-)
XLOC_009415 NA non-coding downstream 1211422 36421591 ~ 36437846 (-)
XLOC_009444 CR944667.3 non-coding upstream 202596 37876716 ~ 37880887 (-)
XLOC_009453 NA non-coding upstream 622037 38296157 ~ 38297734 (-)
XLOC_009455 NA non-coding upstream 751428 38425548 ~ 38425845 (-)
XLOC_009456 NA non-coding upstream 873707 38547827 ~ 38550804 (-)

Expression


Co-expression Network