AMCG00005930


Basic Information

Item Value
gene id AMCG00005930
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10187612 ~ 10196882 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005930
ATGGAGAGCTGCCTGTCCATCTTTTCTCTGGCTGTCCTGGTTCTGCACACAACAGCCACTCATACAGATGAGGCAATGATTCACTCAGAGACTGGGAGCCGGGGGCCGGGGCTCAGGGTCTGGGGCAGGGGGGCAGTCCAGCTGCTCAGGGAACAGAGGAGAATGAACAAGTGTGGTCTGACTGTTCCAGCAGATCCTGTCTTTGAGGGTTGGTGCCAGATCGAGAGGCCAGAGAGAAAGGACATCAGAACAGAAGAGGAGAACAGAACACCAGAACAGaaaatttgaatgtaaaaacTATGTGACACTGAATAATACAATATCATTAGAGAGTCCAGGAATATGCTTGTCTCTAGATTTCCTgatcttttaaaaacatgaggagaggagaaacaaatcacaaactgcaacagaaacaagatacattttctctctttaaagGATCAGCAAGGCTGTTTCAACAGGCCCatcaaaaatatttgaaacattcaGGAAATCTATGCAATCTGTTTTGCTCATTGGGTTGCATAATATGCAAATCAAGGTCTCATAAACTCTCCTTTATTAGTGTTCTAAAATAATAGTTGAgagtttttaaacatgtatttgacattaatgtcacattttagtGGCTATAGGAAATCAGAATGATTGTACTGTTATAATGTACAGATATGGTGGCCCTATCACTCAGGAATTTACAGATGCTACAGAACCACATGAGAGACCCGATGAGGAGCCAATGAAATTCCTAGATCTGATCTAGAGTTTCACTTGTTTTCTGCAATGATTTAATAATAGGTCTCTGAGGATCTGGAGCCCATTTTTGTCTTTTACCATTAAACGGGAAAGTACATGCTGAATCTGATAAGATTAGGGAGAGTAAGGAGACGTGTTCTCTATGGGGGATGTGAAGTGAATGTTCGCAGAGATGGCAACCAGAGGAATAGGAGgggagagagagattactTCACACCATCTCTCAGATCTGAGGCTTGTGCTTCTGGGTGGTGAATCAACCGGAAAGAGTTGCTCAGGAAACACCATCCTGGGCAGAAAGGAATTTCAGACTGGAATTGGAACTAAAGAGTGTGTAAAGAGCCAAAGTGAGGTAGCTGGGAGGCAGGTCACTGTGGTTGACACACCAGGCTGGGCGTGGTGTTTTATCCTGCACTCTGTAGAGCAGCTAGAACAAAAGCTTGTGCGtagtctgtctctgtgttccCCTGGACCCCACGCTCTCCTCCTGGTGATTCCTGTGGGCTATGTCACAGAAGATGATAGGAAAGCAGTTGAAGAACACTTGAAACTTTTCAGTGAGACGGTCTGGAGACACACAATagtgctgttcaccaaaggggACAGACTTAAACAGCGGACCATTGAGCAGCATATTGAGCAAGAAGGAAGGGATCTACAGCAGATTGTTGAAAAATGTGGGAACAGATATCATGTTTTCAACAATGAGAACAAGGGAGATTGCACTCAGGTCACAGAGCTCCTTCAGAAAATAGAGCAGATGGTGGCAGCCAATGGTAGCAGCTACTACCTCAATAAGATGTATCAAGTGATGGAGGAAATCATTAGACTGCTGGAAGATACATTGAAAGAGAGGAATGAtgatggagacagagagaagattAAGAAGTGGTATGAGAAAAGAGAAGAGGAAGTCAGACAGAGGTATGAGGAGatggacagaaagagagaacatGAGTTGAAGGAAAAGTTTGAGGAGGAATGGAACCGGAGAGAGAAGGAGCTCATGGAGAAGAGAAATACATTGAAGCAAGTGGAgcagaagaaagagaaggatgAATCCGATTTGTCTGTCAAGAGCAGGAACGGCATGGACCCCACCATCCTCATGTCTGAATGTGATGGAGCAACTCCTAAGAGAGAAGTAGGAGAGACTGCCATAGAGAAACAAGAGCTGAAACAGATGGCTGAGGAACCACTCAAAGAGAAGGAAGACCTGAGGTTGAATATTAGAAAGTCACTGCAGGAAGAAGAGTTGGAGAAAGAGATGGAGCACCACAACCTCCTTGTCAATGGGAGAATCAACAAACATGGTTCCACTGCCAGGATGACACAGATTGCTTCTGGTGAGCTGAGGATTGTGCTGCTGGGGGGGACAATGGACGGAAAGAGTTCAACTGGAAACACACTCCTGGGCAGAGATGAATTTAAAGCTAACATTGTTGGAGGAACTAAGGAGTGTGAGAAGAGACAGGGTGAAGTATCCGGGAGGCAGGTCATTGTGGTTGACACACCTGGCTGGAGCTGGGATTCTATAAATCTCACACCAATATGGGTTAAAGAGAAGATTGTACAGAGTGTATCTCTGTGTCCCCCAGGCCCCCACGCCCTCCTCGTGGTGTTTCCTGTGGACTATGTAAGAGAAACAGACAGGAAATCAATGGAGGAACACCTGAATCTACTTGGCGAGAGAGTCTGGAAATACACAATATTGTTGATCACCTGTGGGTACAGACTGGGGAACACATCCATTGAGGAACATATTGAGAAATGGGAACCCCTCCAGCAGTTCATTCAGAAATGTGGAAACCGATATCATGTTCTGGAGAACAAGAACGGGGGTAATTGTACCCAAGTCACAGAGCTCCTTGAGAAAATTGAGGATATGGTGGCAGGGAACAATGGCAACTACTACTGTAATGATATATACCAGAATGTCGGAGACCAGATTATGCAGAACGAAAAAGAAGACAGACTGAGAGCAGAGACAGTGGGAGTCAGGGAAGGGAAGAGGAGGTCTAATGAGAGTACCAACAGGCTCATATGGATTTCTGTGTTGCCAGCATCAGTAACACTAGGAGCAGGTGTAGGAGCAGTATTAGGGGCAATAACAGGAGCACTGAGTGGACCATTAGGGACAGCAGTAGGAAGTGCTATAGGAGCTGTAGCAGGAGCTCAGGTGGGAGCTTTAATGGGAGGGGAAGCCAGAGCAGTATTGAGAGAGCCGTAGACACACAACACTCTCTTTACAGCAGCAGTAGTGATGGACACCGTGACAATTAAAGAGAGCACAGTACTTTGGTAAGGGGTTAATCATTTCTTGAGATACAATCCCCGGTGAGggaaattcattttcattttttggtgaAGAATTAAAGGTGAACGTCTACTCTGAATAGAGTGATACTGCTATAAAGCATATGCTGtaactgaaaatattaatatttaacagtTTCACATTATctaaactgtaaatatataaatattttttgtaaattg

Function

GO: NA

KEGG:

id description
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005930 True 3258 mRNA 0.44 6 10187612 10196882

Neighbor

gene id symbol gene type direction distance location
AMCG00005931 NA coding downstream 63727 10107257 ~ 10123885 (-)
AMCG00005933 NA coding downstream 88096 10096144 ~ 10099516 (-)
AMCG00005801 NA coding downstream 106403 10069124 ~ 10081209 (-)
AMCG00005800 NA coding downstream 122162 10058921 ~ 10065450 (-)
AMCG00005809 txndc17,txd17 coding downstream 240916 9943691 ~ 9946696 (-)
AMCG00005932 NA coding upstream 32986 10229868 ~ 10271524 (-)
AMCG00005849 LOC107676965 coding upstream 158154 10355036 ~ 10370381 (-)
AMCG00005848 NA coding upstream 177541 10374423 ~ 10377678 (-)
AMCG00005825 LOC106584389,LOC105895145 coding upstream 187901 10384783 ~ 10387397 (-)
AMCG00005824 NA coding upstream 194333 10391215 ~ 10394151 (-)
G154400 NA non-coding downstream 42681 10144483 ~ 10144931 (-)
G154399 NA non-coding downstream 48687 10137428 ~ 10138925 (-)
G154391 NA non-coding downstream 95996 10089554 ~ 10091616 (-)
G154280 NA non-coding downstream 614704 9572215 ~ 9572908 (-)
G154260 NA non-coding downstream 749713 9435880 ~ 9437899 (-)
G154575 NA non-coding upstream 379088 10575970 ~ 10576502 (-)
G154642 NA non-coding upstream 493266 10690148 ~ 10693965 (-)
G154675 NA non-coding upstream 605682 10802564 ~ 10818716 (-)
G154715 NA non-coding upstream 782676 10979558 ~ 10983480 (-)
G154723 NA non-coding upstream 800895 10997777 ~ 10999382 (-)
G154250 NA other downstream 752672 9425290 ~ 9434940 (-)
G154142 NA other downstream 1095039 9090422 ~ 9092573 (-)
G153806 NA other downstream 2062927 8091748 ~ 8124685 (-)
AMCG00005704 NA other downstream 2186207 7999336 ~ 8001405 (-)
G153733 auts2 other downstream 2399291 7785554 ~ 7788321 (-)
AMCG00005850 NA other upstream 98717 10295599 ~ 10352782 (-)
AMCG00005862 NA other upstream 346652 10543534 ~ 10551355 (-)
AMCG00005839 LOC103367321,LOC107729686,LOC103398303 other upstream 541662 10738544 ~ 10752114 (-)
G154677 ef2,eef2,LOC106613766,LOC101482186,LOC107384141,LOC108427162,LOC108414462,LOC102796634 other upstream 646959 10843841 ~ 10912745 (-)
AMCG00005831 shdb,LOC107719565,LOC107676987,LOC107729709,LOC103027120,LOC106584413,LOC108439278 other upstream 652633 10849515 ~ 10865796 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009413 si:dkey-23k10.5 coding NC_007126.7 CM002899.2 36349009 ~ 36357889 (-)