AMCG00005809 (txndc17,txd17)


Basic Information

Item Value
gene id AMCG00005809
gene name txndc17,txd17
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 9943691 ~ 9946696 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005809
CGCGACTGCTACGGGCAGCGCACTGGGACATACAGAGCCAAGTCACCCGACAGAAAAGCAATGATTTCTTAAGCTTTTACTACATGAGtcaatttagtttatttgttgaTATAAtatcttgttgttgttttcattcttcCATATCGTCAATACATGCACACCCCCAAATAGAGGTTATATTTAAAAGCGACTTCCTATGCCACTTTGGCCGGTGATCACAGGAAGCTCATTAAATGGACTCGGTAAGGGAGGAGTCACAGACTGTACGTCTCTTTCGGGGCTGTTTGACTGTAACTACGGTAGTTCAATTAAAACAGAGTCGCGCATCCACAGTTAAATCACCCTGTTATTGTGCACCGTGCCAGCGGGACCATGTCGCAGTATGAGGAGGTCAGTGTGCACGGTTACGACGAGTTCACCAAGGCGGTGTCGGAGCGCAAAGGCAAAGACATCTTCGCTTATTTTTCTGGGAATAAGGATCCACAGGGTGTGAGTTGGTGTCCGGACTGTGTGAAAGCGGAGCCCATTGTGCGCGGGGAGATGAGACACCTACCTGCAGGCTCAGTCTTCATCTACTGCCAAGTTGGGGACAGATCCTACTGGAAGGATCCCAACAACGAGTTCAGGAAGGTGCTGAAGCTGAGCGGAGTGCCCACGCTGCTGCGATACGGCACGCCTCAGAAGCTGGTTGAGGAGGAGTGCTTCAAGGCCGATCTGGTGCGGATGATGTTCACAGAGGACTAGGTCGCTCCCAGCCAACCCCCACTGCGCCTTCTCGTAACCCACCGTGTCCACCGCGCCTTAAACTGACTCTTAAGCCTGCTTCGTCACAGCACTGCCAACGAAGGGATCCAGAGTGAAGCCAAATATGTCTCCACCACCTTCTTAATGCAACGCGCTGGGTGTTTATGTAATGTGATCAGGGAATTGATAATGACAACGTCTGAAGAGAAACTTCCAAGGGACAAAATGTGATCCATAACATAAATTAATAGGGCTTTTACTAGGTTAATTCTTAGAGGGTTCTTGCTGAATGGGCTAGCAGCATTTTCAATTCTATCCAACtcagaaggttttttttttttttttttttttttt

Function

symbol description
txndc17 Predicted to enable protein-disulfide reductase (NAD(P)) activity. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Orthologous to human TXNDC17 (thioredoxin domain containing 17).

NR:

description
Thioredoxin domain-containing protein 17

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005809 True 1098 mRNA 0.48 4 9943691 9946696

Neighbor

gene id symbol gene type direction distance location
AMCG00005810 NA coding downstream 37379 9891658 ~ 9906312 (-)
AMCG00005811 NA coding downstream 53108 9870078 ~ 9890583 (-)
AMCG00005769 NA coding downstream 82767 9838157 ~ 9860924 (-)
AMCG00005781 NA coding downstream 264606 9673690 ~ 9679085 (-)
AMCG00005782 NA coding downstream 304208 9633784 ~ 9639483 (-)
AMCG00005800 NA coding upstream 112225 10058921 ~ 10065450 (-)
AMCG00005801 NA coding upstream 122428 10069124 ~ 10081209 (-)
AMCG00005933 NA coding upstream 149448 10096144 ~ 10099516 (-)
AMCG00005931 NA coding upstream 160561 10107257 ~ 10123885 (-)
AMCG00005930 NA coding upstream 240916 10187612 ~ 10196882 (-)
G154280 NA non-coding downstream 370783 9572215 ~ 9572908 (-)
G154260 NA non-coding downstream 505792 9435880 ~ 9437899 (-)
G154237 NA non-coding downstream 550358 9343755 ~ 9393333 (-)
G154235 NA non-coding downstream 611658 9331343 ~ 9332033 (-)
G154234 git1 non-coding downstream 613158 9325522 ~ 9330533 (-)
G154391 NA non-coding upstream 142858 10089554 ~ 10091616 (-)
G154399 NA non-coding upstream 190732 10137428 ~ 10138925 (-)
G154400 NA non-coding upstream 197787 10144483 ~ 10144931 (-)
G154575 NA non-coding upstream 629274 10575970 ~ 10576502 (-)
G154642 NA non-coding upstream 743452 10690148 ~ 10693965 (-)
G154250 NA other downstream 508751 9425290 ~ 9434940 (-)
G154142 NA other downstream 851118 9090422 ~ 9092573 (-)
G153806 NA other downstream 1819006 8091748 ~ 8124685 (-)
AMCG00005704 NA other downstream 1942286 7999336 ~ 8001405 (-)
G153733 auts2 other downstream 2155370 7785554 ~ 7788321 (-)
AMCG00005850 NA other upstream 348903 10295599 ~ 10352782 (-)
AMCG00005862 NA other upstream 596838 10543534 ~ 10551355 (-)
AMCG00005839 LOC103367321,LOC107729686,LOC103398303 other upstream 791848 10738544 ~ 10752114 (-)
G154677 ef2,eef2,LOC106613766,LOC101482186,LOC107384141,LOC108427162,LOC108414462,LOC102796634 other upstream 897145 10843841 ~ 10912745 (-)
AMCG00005831 shdb,LOC107719565,LOC107676987,LOC107729709,LOC103027120,LOC106584413,LOC108439278 other upstream 902819 10849515 ~ 10865796 (-)

Expression


Co-expression Network