AMCG00005769


Basic Information

Item Value
gene id AMCG00005769
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 9838157 ~ 9860924 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005769
ATGGCGTCCGTCGTGTCACCGGGACCGGTCGGCGCCCAATCGGAGGTGTGGGAGGCGCTCCCGTGTCGAGCAGGCGCGGTCTGGGCATGCGCATGCGCCGAACCCCCGGCAGCGCGAGGCCGTTTCCCGCGTGACGCTCTGTCCAAAGGCAACGAGGTGTCCAGCCCTGTGCTGCAGGTGGTGAACATCCGGCGCATCGAGGGCAGCAGTGGACCGGCCCGCTTCCGGCTCATGATGAGCGATGGGCTCAACACCATGTCCTCCTTTATGTTGGCCACACAGCTGAATCCCATGGTTGAGCAGAACATCCTGGCCACAAACTGCATCTGCCTGATCAAGAGGAATGTCCTGAATGTGCTGAAGGATGGCAGGCGTGTGGTCATCATCGTTGACCTGGAGGTTGTGAAGTCTGCTGACGACGTGGATGGAAAGATTGGAGATCCGACACCGTACGTGGAAGGTCAGACCAAGCCGCAGCAGCCCTCCGTCTCCAACCCTCCTGCGCGGCCCTTCCAGCAGCGCAACACCTACAACTCTGATGCTTCAGTGAGCAGGGCTCCCAGCAAAGACTTTGGGAGGAAGCCGAACCCGTCTCTTCCCAACACTCCCGGTGGCTCCTCCAAGGTGGTTCCCATTGCCAGCCTTAACCCCTATCAGTCCAAATGGACCATCAGAGCACGCGTCACCAACAAGAGCAGCATTCGCACCTGGAGCAACTCCCGCGGAGATGGCAAGCTCTTCTCCATGGAGATCGTGGACGAGAGCGGAGAAATCAGAGTCACCGGCTTCAACGAGCAAGTCGACAAATATTACTCTCTCATTGAAATCAGCAAGGTGTATTACATTTCCAAAGGCACTCTGAAGATTGCCAATAAGCAGTACACCTCCCTGAAGAACGACTATGAAATGACGCTCAACAGCGACACCTCTATTATCCCCTGTGATGACGCGCAGGACGTGCCCATGGTGCAGTTTGACTTCATCTCCATTGCCGAGCTGGAGAACAAGGACAAGGACTCGGTGGTCGATGTGATCGGAATCTGCAAAAGCTTTGATGAAGTCTCCAAGATTACGACCAAGGCCAACCGGGAAGTGTCCAAGAGAACGGTCAACCTGATGGATATGTCCGGCAAAGTTGTCACAGCCACCTTGTGGGGAGAGGAGGCAGAGAAGTTCGATGGCTCCACACAGCCAGTGTTGGCAATCAAGGGGGCGCGCCTGTCTGATTTTGGGGGTCGGTCCCTCTCCGTTCTCTTCAGCAGCACTATGATGCTCAATCCGGACATCCCTGAGGCCTACAAACTGCGAGGCTGGTTCGACGCAGAGGGCCACGCGATGGAGGGCCAGTCCGTGTCGGAGATGAAAGGGGGCTCTGGGGCCAGCGGGGGCAACACCAGCTGGAAGACCCTGTCGGAGGTGAAGGCGGAGAACCTGGGCCATGGCGAGAAGGCCGATTACTTCACCTGCGTGGCCACCATTGTGTTCCTGCGCAAGGAGAACTGCATGTACCAGGCCTGCCCATCCCAGGACTGCAACAAGAAGGTGGTGGACCAGCAGAACGGGCTCTTCCGCTGCGAGAAATGTGACCGCGAGTTCCCCAACTTCAAGTACCGCCTCATCCTGTCTAATGAACAGGCGTTTGAAGAAGTGTTCCAGAATGCCAACTTCACAACTTACACCTTCCGGAATCGTGTCAAATTGGAGACGTACAATGACGAGTCTCGTATCAAAGCAACCGTGGTGGATGCAAAACCGGTGGATCACAAAGAATACAGCAAGCGGCTGATCATGAACATCCGAAAACACGCGACACAGTAACAGAGACCCACTCCGCTCACGGACACTGCCTCTGCTTTGAATCTCCGTGCGAATGCTCCCTTAGTtgctcaagttttttttttttttttttttt

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0006260 DNA replication biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K07466 RFA1, RPA1, rpa; replication factor A1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005769 True 1912 mRNA 0.56 16 9838157 9860924

Neighbor

gene id symbol gene type direction distance location
AMCG00005781 NA coding downstream 159072 9673690 ~ 9679085 (-)
AMCG00005782 NA coding downstream 198674 9633784 ~ 9639483 (-)
AMCG00005780 LOC103366110 coding downstream 212528 9609091 ~ 9625629 (-)
AMCG00005770 NA coding downstream 248377 9587799 ~ 9589780 (-)
AMCG00005772 NA coding downstream 257462 9572937 ~ 9580695 (-)
AMCG00005811 NA coding upstream 9154 9870078 ~ 9890583 (-)
AMCG00005810 NA coding upstream 30734 9891658 ~ 9906312 (-)
AMCG00005809 txndc17,txd17 coding upstream 82767 9943691 ~ 9946696 (-)
AMCG00005800 NA coding upstream 197997 10058921 ~ 10065450 (-)
AMCG00005801 NA coding upstream 208200 10069124 ~ 10081209 (-)
G154280 NA non-coding downstream 265249 9572215 ~ 9572908 (-)
G154260 NA non-coding downstream 400258 9435880 ~ 9437899 (-)
G154237 NA non-coding downstream 444824 9343755 ~ 9393333 (-)
G154235 NA non-coding downstream 506124 9331343 ~ 9332033 (-)
G154234 git1 non-coding downstream 507624 9325522 ~ 9330533 (-)
G154391 NA non-coding upstream 228630 10089554 ~ 10091616 (-)
G154399 NA non-coding upstream 276504 10137428 ~ 10138925 (-)
G154400 NA non-coding upstream 283559 10144483 ~ 10144931 (-)
G154575 NA non-coding upstream 715046 10575970 ~ 10576502 (-)
G154642 NA non-coding upstream 829224 10690148 ~ 10693965 (-)
G154250 NA other downstream 403217 9425290 ~ 9434940 (-)
G154142 NA other downstream 745584 9090422 ~ 9092573 (-)
G153806 NA other downstream 1713472 8091748 ~ 8124685 (-)
AMCG00005704 NA other downstream 1836752 7999336 ~ 8001405 (-)
G153733 auts2 other downstream 2049836 7785554 ~ 7788321 (-)
AMCG00005850 NA other upstream 434675 10295599 ~ 10352782 (-)
AMCG00005862 NA other upstream 682610 10543534 ~ 10551355 (-)
AMCG00005839 LOC103367321,LOC107729686,LOC103398303 other upstream 877620 10738544 ~ 10752114 (-)
G154677 ef2,eef2,LOC106613766,LOC101482186,LOC107384141,LOC108427162,LOC108414462,LOC102796634 other upstream 982917 10843841 ~ 10912745 (-)
AMCG00005831 shdb,LOC107719565,LOC107676987,LOC107729709,LOC103027120,LOC106584413,LOC108439278 other upstream 988591 10849515 ~ 10865796 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G285521 NA non-coding CI01000072 null 1413878 ~ 1437803 (-)