CI01000047_06436919_06455480 (HS3ST3A1)


Basic Information

Item Value
gene id CI01000047_06436919_06455480
gene name HS3ST3A1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 6436347 ~ 6455817 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000047_06436919_06455480.mRNA
AAAGACAGCTGAAGCTCCGCGCGCACTTTCATGAATGAATGAGAGCAGCTTCAGGACAGCGATCCTCCCGGGACAGTCGCGTCCACGCGCTCCTGCACGGATATTACAACCTCTGTTTTCTTCTATCCGCGTCAAGCATGGAAATACGAGTGTCTCCCTGAGACAATGAAACTCCGCACAGCACATTCACTCAAGGAATGAGAACCGGGAGGCGCGATGTCTTCGGCACCGCTGCGGGACGCGCGCGCTGTCATTCGCCAGTGTGGCTTCCAGCTGGTCAAAGTGAAACGAATAAAGTCCTGAAGAGAATGGCCGACCACAGAGCGTCCTCAAAGGGATGGCAACTTTTACCAACGCGCCTCTGGACCTGCGGAAACTCTTGCAAAAACTAGCCGTCATGTTTTCCTTCAGCATCGTATGCGTCTCGATCCTCTACCTTCTGCTGGGACGCTGCGAGTCGGACTCGGCGGACAGTTCACAGAACTCACCGATGGGATGGTATAATAATAAGACCGTGCTAATTGCGCCTGACTCTCTGGGAGAAGATAGCGTGGATGCCAACAGCTCAGGGAAAGACTGGACCGCGACCAGGCGACTCCCGCACGCGCTTATCATCGGAGTAAAGAAGGGAGGCACGCGCGCGCTCCTGGAGTTCCTGCGGCTTCATCCGGACATCCGCGCTCTCGGGTCAGAACCGCATTTCTTTGACAGGCACTACGCGCGTGGACTCAGCTGGTACAGAATTGGCTCGCTTAGTGTCCACGGCCACATTAATTGGCCTGAAAATGCTCTTGAAACGAACGCTTCTACGGTTGTCATGCGAGGCGTTTGCCTGAGCATGATGCCCAAAGCCCTCAACGGGCAAATCGTGATGGAGAAGACACCCAGATACTTCGTCACCCCAGAGACGCCGAGCCGCATCCACGCCATGTCGCGGGACATCAAGCTGATAGTGGTGGTGCGAGACCCCATCACCCGCGCCATTTCAGACTACACCCAGATCATCTCAAAGACCCCCGACATTCCCAGCTTCGAGAGCCTGACGTTTAAGAACCGATCGGCAGGACAGATAGACTCGCTCTGGAGCCCGCTGTACATCGGCCTGTATGCCAGGCACCTGGAGCGATGGCTGGCCTACTTCCCGCTCTCGCAGATCCATTTCGTCCATGGAGAGAGACTGATCAGCGACCCGGCGGGTGAGTTGGGCCGCGTGCAGGACTTCCTCGGCCTGCAGAGGATCATCACGGATAAACACTTCTACTTCAACAAGACCAAGGGCTTCCCTTGCCTCAAAAAGCCAGAAGGCAGTAGCAAACCCCACTGTCTGGGCAAAACCAAAGGCAGAAAGCATCCTAAAATCGACCCAGAGGTCATTCAGAAACTGAGGGAATTCTACCAGCCACACAACCTGAAGTTCTACCAAATGGCAGGCATGGACTTCGGATGGCAATGAACTTTTGTGGACATCTGTGTGCCTATTTGGTCAATGTTGGCAAGAAGTGCAGACGAATCGTGATTGAAGTGAAACACGATATCTTAGGTTTGTCGATGGCTCCATAGCTGTTCAAATCAATGCGTCTGCCAGATACAGTAAACAGAGACCTGAGCACTTCGGGTCAGAATAGTCTTTCATACCGTCCGTCGGTGTGGCTCAGTTTGAGAGAACTGATAGCAATGACCTTAAATCATTGGTTGAAGTAGCGCTTTTCTGCTCTTGCCATTTTGATGTCTTTTTTATGTTGCCGAGTCAAACAACAGCTTCAATCATGTTTGATCGATCATCCATATCAAAAGGAGTTAACTGTGTAGCATTAGACATGATTTGTCATTGTTGGAGTATTTACACTGAACAGATTGTAGCACATCTGTGTAAAGGCTGGTCTACAATCACATTCTGTATCCAATGGATCAGATAATTGGTTCAAATGTAGACGATATGCAGATGAGGCCAGTCCTTTTGAATTTTCCCTCTGCATGCATGATTTTGCACTAGTCTGAAATGCAGCCCACTAGAAATCAAATAAA

Function

symbol description
hs3st3a1 Predicted to enable [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity. Predicted to be involved in glycosaminoglycan biosynthetic process. Predicted to be located in Golgi membrane.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000047_06436919_06455480.mRNA True 2025 mRNA 0.51 3 6436347 6455817

Neighbor

gene id symbol gene type direction distance location
CI01000047_06337531_06343900 GLP2R coding downstream 92333 6337093 ~ 6344014 (-)
CI01000047_06327240_06328630 PTS coding downstream 107717 6326771 ~ 6328630 (-)
CI01000047_06312165_06320684 NA coding downstream 114847 6311168 ~ 6321500 (-)
CI01000047_06302441_06309359 DCXR coding downstream 126988 6302441 ~ 6309359 (-)
CI01000047_06242992_06270894 NA coding downstream 163556 6242727 ~ 6272791 (-)
CI01000047_06487774_06496807 DHRS7CB, DHRS7C coding upstream 31898 6487715 ~ 6496807 (-)
CI01000047_06574147_06577660 BSK146 coding upstream 118231 6574048 ~ 6577979 (-)
CI01000047_06587350_06593162 NA coding upstream 131273 6587090 ~ 6593162 (-)
CI01000047_06644025_06659494 SULT2ST1, SULT2ST2 coding upstream 187933 6643750 ~ 6659694 (-)
CI01000047_06660338_06666635 SULT2ST1, SULT2ST2 coding upstream 204483 6660300 ~ 6666635 (-)
G204012 NA non-coding downstream 22105 6374619 ~ 6414242 (-)
G204010 NA non-coding downstream 69695 6366375 ~ 6366652 (-)
G204005 NA non-coding downstream 90874 6345234 ~ 6345473 (-)
G203855 NA non-coding downstream 299248 6134717 ~ 6137099 (-)
G203888 NA non-coding downstream 374395 6061530 ~ 6061952 (-)
G204031 NA non-coding upstream 8623 6464440 ~ 6466219 (-)
G203942 NA non-coding upstream 84208 6540025 ~ 6546064 (-)
G203963 NA non-coding upstream 94373 6550190 ~ 6552171 (-)
G203946 NA non-coding upstream 113180 6568997 ~ 6573581 (-)
G203924 NA non-coding upstream 250852 6706669 ~ 6751591 (-)
G203881 NA other downstream 392558 6043253 ~ 6043789 (-)
G203840 NA other downstream 509003 5918508 ~ 5927344 (-)
G203286 NA other downstream 1559613 4874379 ~ 4876734 (-)
CI01000047_04575184_04576337 GNGT2B, GNGT2 other downstream 1859382 4574335 ~ 4576342 (-)
CI01000047_04285605_04286644 COA3A other downstream 2149666 4285227 ~ 4286694 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_005044 hs3st3l coding NC_007123.7 CM002896.2 415711 ~ 431249 (-)