G203924


Basic Information

Item Value
gene id G203924
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 6706669 ~ 6751591 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU231446
ATGAATGAATGAATGAATGCATATTTCAGCCTCATTTTTTCTCGACTTATGAATAACTCTCATATTTACAGGTGACTTCATCGTCTTCGATGATATCCTCGAGAGAGTAGTTTCTGAGGAACTCTGCGAAAGCCCCGTTCTGCTTGAGCAGCTCCTGATAGGAGCCCATTTCTGACACCCGACCGTCCACCAGTACCAGGATGTTGTCCACCTGCGGCAGGAAGCTGATGCCGTGGGTCACCAGGATCCGAGTCTTGCCCTTCAGGACTCCTTCAGGACCGATGACTTTATCAAAAATATGCTTAGCAACATGAGCGTCCACCGCAGACAGAGGGTCGTCCAGCAGATACACGTCTGATTCACTGTACAGCGCTCGGGCCAGACTCACTCTCTGCCTCTGACCGCCAGACAGATTAATGCCCTTCTCCCCGATCTCTGTCTGGTCGCCTCCAGGAAGCACTTCGAGGTCAGGGGTCAGTGCACAGGCCTCCAGCACGCAGCGGTACTTCTGCTCCACGTAGGGTCTGCCAAACAGGATGTTGTCTCTCAAAGTGCAGTTCTGGATCCACGCTTGCTGTGGTACGTAAGCCACAGAGCCCCGTATGGAGATCTGGCCCTCCAGCTTCTCCATCTCTCCGAGCAGGGCGGACACAAGTGAGGTCTTCCCACAACCCACGTGACCCACCACCGCCAGCAGCGAGCCCTGCGGCACCATCACATTAATGTTGTCAAGAGTGGGTTGGTCTTGTTTGGCCCATGCAAATTTCCCATTTACAACCGTCACGGCATATTCTGAAGCATTGTTTCTTCTGTCCACGTTCTCTGGATCCAGCTCAGGGTGACTCAGGAAATCCTGGATGCGCTTCAGAGACACGCTGGCTTGTACGATGCTGCTGATGACTTGTGGGAGCATGTTGAGTGGGAATCTCAGGATGTTGAACAGAGACAAGGACACAAAGGCCCTCTCTGCATCCAAGATATTATTTTTATCCACAGTCACATATACAGCAAACGTCGTCAAGGCCACCAGAAAAGGCGCGCTGGTCCAGGCCATGGTGGACAGAGCGCTGAGGTAGGCCGTCTTCCGCAGCACATTCAGCTCCTTCTGTCGGATCTGCAGGATCTTCTCCTTGAAGGAGATTTCCCAGGCGTAGAGCTTCAGCACCTTGATGCCATTGAGAATCTCATTCATCAGCTTGATGCGGTCGTCCTTGTGTTTCATCTGCTCCACCTGGTAAGTTCTGGTCTTCATGGCGATGAAAGCGTTTAATGGGATCAGCAGAACCATCACGGCCACACCAGCCAGAACCGACGCACCCAGATTCTGCCAAAGGAAAAAGAGAGCCAGAATGATCTGCAGTGGCGCTGACCACAGCATGTTCAGGAAGGTGGTGAGATCCATGAAGCGCTGAGCGTCCACAGACATCAGATTGACCACCTCACCCACCGTGGATGAGCGCTTGGCTTCATTCGTGATCACTAGTGACTTCCTGTAGATGGCTCCGATGATCCCACTGCGAAGCCTCATGCCTGTGACAAAGCAGTACTGAAAGTGCTGATGCAAGATGAGGGTCTGTAAGAGGGAAGTGCCGAACATCAGGAACGCCAGCGCGTAACCCCACCACAACGGGGCGTCCTTTTCTTTGGTGAAGTCAATCAACATCCTGAGGAGCTGTGGGTTGACGAAGGTAATGAGATCCTGCAGTAGCTTGAAAGCGGAGCCGATGAGGAAATAGGGCCCAAAGGCTCGGAGCAGGGCCCTCAGGAAGGAGGGCTTCCGGGTCTCTTTTCTTTCGGACAGCAGAACCTCTGCCTCCTCAGGACTGCCGCCCACGTGGTTGGTTTCAGCGCCTGTTTTTGTAAATGTGGCCTGCTCCTTCACACTCTGTTCACTCTGCGCTTTGGATTTCTCCACCTCCCATTCGTTGAGCAGACTGGGAACCACCAACTCTGAACTGTCCTGCTTGTTCAGGGACCAGAGGTCTTTATTCTCCAGCGGTGATTTGTAGCCTTTGATAGCCATGCTTGTAAACCACCAAAAGGTCATTTTTGAGAGGAATCCAGCAGTTGTTTCTGGACATACATTAGGATCTGTGGCCACGCTGGAGAAGAGAGGAGGCTTTTCATTGAAGCATGACAGGATAAGTTCAAGCAGGGTGAGGCCAAAGTAAATGTAGAACGTTGTGAACCTCAGCTTGTCATTGACCCCATTCTCTTGATTGGCATGCATGATTTTGGACCGGAAAGGCACAATGGCACACAACACTGAGATCGTCCAAAATATGAAGAGCACACCGGACGACTGCACTCCTCTCAGCCTCTCAAACTGGATCAGGAACGTGGCTAACAACATTGTCATGCCGACTATTAAAGGTGTAACAAAATATATTGGGGCTATAGGTATAGGTGGATTCTGGTTCATCTCATGAAACGAAGAAAACAGATCTGTCCAGCATACTATCCACAATATCAAGCCAAGAACCGTTTTGATTCTGTTTAATATAGACATCATGATATAGCCTCTGCTGTTCCTCTTGAGGTAGAGGATGTAGAAAGGCGACACCACCCACAGGTAGATGCAGGGAGCCCATGGCAGTACTGACAGCTGAAAGCATTCTGGGAGGTCAGGCCGGTCTGAGCGCAGTGTGAGGTTGGGCCAGAATGGAAGTTGGCCGCATAAGTGCTCCATCGCAGCTGTTAAATGGACCTCTTCCTTGTGCCGAGAGGATGTGGCTGCTTTTCTTTGCTGCTCTTTTGTTCTTGCATGCAACTAAAACACACGGTCATGCGCGCGTACATGGACGACACGCACTGCATCGACGGACAGACAGATAATCTGTTATTAGTTGTGGCCGGTACCTAACCTCCTCCCCCGGGGAACGCGTGTGACGTCCACAACT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU231446 True 2900 lncRNA 0.51 19 6706669 6751591

Neighbor

gene id symbol gene type direction distance location
CI01000047_06667661_06692521 NA coding downstream 14148 6667220 ~ 6692521 (-)
CI01000047_06660338_06666635 SULT2ST1, SULT2ST2 coding downstream 40034 6660300 ~ 6666635 (-)
CI01000047_06644025_06659494 SULT2ST1, SULT2ST2 coding downstream 46975 6643750 ~ 6659694 (-)
CI01000047_06587350_06593162 NA coding downstream 113507 6587090 ~ 6593162 (-)
CI01000047_06574147_06577660 BSK146 coding downstream 128690 6574048 ~ 6577979 (-)
CI01000047_06843638_06844618 TOB1A, TOB1, TOB1B coding upstream 91779 6843370 ~ 6844618 (-)
CI01000047_06900704_06954882 SPAG9 coding upstream 149113 6900704 ~ 6954882 (-)
CI01000047_06958499_06967108 DAGLB coding upstream 206392 6957983 ~ 6967834 (-)
CI01000047_06968741_06972782 ERD2, KDELR2.L, ERD22, KDELR2, KDELR1, KDELR2A, KDELR2B coding upstream 216733 6968324 ~ 6972850 (-)
CI01000047_06978552_06982232 METTL9 coding upstream 226857 6978448 ~ 6982542 (-)
G203946 NA non-coding downstream 133088 6568997 ~ 6573581 (-)
G203963 NA non-coding downstream 154498 6550190 ~ 6552171 (-)
G203942 NA non-coding downstream 160605 6540025 ~ 6546064 (-)
G204031 NA non-coding downstream 240450 6464440 ~ 6466219 (-)
G204012 NA non-coding downstream 292427 6374619 ~ 6414242 (-)
G203930 NA non-coding upstream 2198 6753789 ~ 6756733 (-)
G204095 NA non-coding upstream 98111 6849702 ~ 6850132 (-)
G204097 NA non-coding upstream 100048 6851639 ~ 6851838 (-)
G204098 NA non-coding upstream 101012 6852603 ~ 6852803 (-)
G204129 NA non-coding upstream 141243 6892834 ~ 6893180 (-)
G203881 NA other downstream 662880 6043253 ~ 6043789 (-)
G203840 NA other downstream 779325 5918508 ~ 5927344 (-)
G203286 NA other downstream 1829935 4874379 ~ 4876734 (-)
CI01000047_04575184_04576337 GNGT2B, GNGT2 other downstream 2129704 4574335 ~ 4576342 (-)
CI01000047_04285605_04286644 COA3A other downstream 2419988 4285227 ~ 4286694 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location