CI01000047_06843638_06844618 (TOB1A, TOB1, TOB1B)


Basic Information

Item Value
gene id CI01000047_06843638_06844618
gene name TOB1A, TOB1, TOB1B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 6843370 ~ 6844618 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000047_06843638_06844618.mRNA
ATGCAGCTTGAAATCCAAGTAGCGCTGAACTTCATCATCTCGTACCTGTACAACAAACTCCCGCGGCGACGAGTCAACATCTTCGGCGAGGAGCTGGAGAGGCAGCTGAAGAAGAAATACGAAGGACACTGGTACCCCGACAAGCCATACAAAGGATCCGGGTTCAGGTGCATACACGTGGGCGAGAAGGTGGACCCGGTCGTGGAGGAAGCAGCCAAAGAAAGCGGGCTGGACATCGAGGACGTCCGCAATAACTTGCCTCAGGACCTCAGCGTTTGGATCGACCCCTTCGAGGTGTCCTACCAGATCGGCGAGAAGGGAGCGGTCAAGGTGCTATACGTGGACGATAATGGCGAGAACGGCTCTGAGCTGGACAAGGAGATCAGGAACAGTTTTAACCCGGAGGCTCAGGTCTTCATGCCAATCACTGACCCCGTGGGCGTCTCCTCCGAGTCCAGTTCTCCGTCGCCGCCACCATTCGGCCAGTCGGCGGCCGTCAGCCCATCCTTCATGCCACGCTCCGCTCAGCCTTTAACCTTCACCACGGCCTCCTTCGCCGCCACCAAGTTCGGCTCCACCAAGATGAAGAACAGTGGCCGCAACGGCGGCAAAGTTGCGCGCAGCTCTCCCACCAACCTGGGCCTGAATGTCAACAGCCTGCTCAAGCAGAAAGCCATCTCCAACTCCATGCATTCGCTCTACGGTTTCGGCCTCGGAAGTCCACAGCAGCAGCAGAAAGCAGCTTCGGCCTTGTCTCCCAACGCCAAGGAGTTTGTGTTCCCCAACCTCCAGGGCCAAGGGAGCTCCGGCGCGATGTTCGCGAGCGAGAACGCCCTCAGCCCTCTGCCGTACAGCAATGCCTTCGACGTGTTCGCGGCCTACGGGAGCATCAATGACAAGTCCCTGATGGACGGCTTAAACTTCAGTCTCAGCAACATGCAGTATTCAAACCAGCAATTCCAGCCGGTCATGGCTAACTAATGGAATGATTGTTGGAGAAAGGAAAACGGAAGGCAAAGACGCACACTTGTTCGACTGTGGAAAATGAAGATCCCTATTAGTCACTGATAAGCGCATGTGCCCAAGGGTGTTTATTTTAATTTTATTTTATTTCTCCCTAATCTCTTTCTCTGCCCCCTTGAGTTCGTACTGAGAAGCTTTCACACACACACACACACACACACACACACACTCACACACAGCTTGGTCAACACGCGTCAATGTTTTCTTTTCCTTTTTTGCCAATAAA

Function

symbol description
tob1b Predicted to enable transcription corepressor activity. Predicted to be involved in regulation of gene expression. Predicted to act upstream of or within negative regulation of cell population proliferation. Predicted to be active in cytoplasm and nucleus. Orthologous to human TOB1 (transducer of ERBB2, 1).
tob1a Predicted to enable transcription corepressor activity. Acts upstream of or within BMP signaling pathway and dorsal/ventral pattern formation. Located in cytoplasm and nucleus. Is expressed in several structures, including hatching gland; mesoderm; musculature system; nervous system; and solid lens vesicle. Orthologous to human TOB1 (transducer of ERBB2, 1).
tob1 Enables receptor tyrosine kinase binding activity. Involved in negative regulation of cell population proliferation; negative regulation of translation; and regulation of mRNA catabolic process. Part of CCR4-NOT complex.

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K14443 TOB; protein Tob/BTG

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000047_06843638_06844618.mRNA True 1249 mRNA 0.54 1 6843370 6844618

Neighbor

gene id symbol gene type direction distance location
CI01000047_06667661_06692521 NA coding downstream 150849 6667220 ~ 6692521 (-)
CI01000047_06660338_06666635 SULT2ST1, SULT2ST2 coding downstream 176735 6660300 ~ 6666635 (-)
CI01000047_06644025_06659494 SULT2ST1, SULT2ST2 coding downstream 183676 6643750 ~ 6659694 (-)
CI01000047_06587350_06593162 NA coding downstream 250208 6587090 ~ 6593162 (-)
CI01000047_06574147_06577660 BSK146 coding downstream 265391 6574048 ~ 6577979 (-)
CI01000047_06900704_06954882 SPAG9 coding upstream 56086 6900704 ~ 6954882 (-)
CI01000047_06958499_06967108 DAGLB coding upstream 113365 6957983 ~ 6967834 (-)
CI01000047_06968741_06972782 ERD2, KDELR2.L, ERD22, KDELR2, KDELR1, KDELR2A, KDELR2B coding upstream 123706 6968324 ~ 6972850 (-)
CI01000047_06978552_06982232 METTL9 coding upstream 133830 6978448 ~ 6982542 (-)
CI01000047_06993737_07007548 POLR3E coding upstream 149104 6993722 ~ 7007548 (-)
G203919 NA non-coding downstream 69873 6748168 ~ 6773497 (-)
G203930 NA non-coding downstream 86637 6753789 ~ 6756733 (-)
G203924 NA non-coding downstream 91779 6706669 ~ 6751591 (-)
G204069 NA non-coding downstream 134547 6708108 ~ 6708823 (-)
G203946 NA non-coding downstream 269789 6568997 ~ 6573581 (-)
G204095 NA non-coding upstream 5084 6849702 ~ 6850132 (-)
G204097 NA non-coding upstream 7021 6851639 ~ 6851838 (-)
G204098 NA non-coding upstream 7985 6852603 ~ 6852803 (-)
G204129 NA non-coding upstream 48216 6892834 ~ 6893180 (-)
G203947 NA non-coding upstream 51383 6896001 ~ 6898152 (-)
G203881 NA other downstream 799581 6043253 ~ 6043789 (-)
G203840 NA other downstream 916026 5918508 ~ 5927344 (-)
G203286 NA other downstream 1966636 4874379 ~ 4876734 (-)
CI01000047_04575184_04576337 GNGT2B, GNGT2 other downstream 2266405 4574335 ~ 4576342 (-)
CI01000047_04285605_04286644 COA3A other downstream 2556689 4285227 ~ 4286694 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_005051 tob1b coding NC_007123.7 CM002896.2 847187 ~ 850457 (-)