XLOC_009519 (grm5b)


Basic Information

Item Value
gene id XLOC_009519
gene name grm5b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 43656241 ~ 43768776 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018679
ATGGTCATTTTGTGTTCTCTCGCATTGCTGCTTTGGCGGATGACGTCGCTTGTGTCGACGGCCCAATCCAACGAACGACGGGTGGTCGCCCATATTCCTGGGGACATCATCATCGGTGCTCTTTTCTCCGTTCACCACCAACCACCTGCAGATAAGGTGCATGAACGCAAATGCGGCGCTGTCAGAGAGCAGTACGGCATCCAGCGTGTTGAAGCCATGATGCATACGTTGGACCGAATCAACGCCGACCCCAAAATCCTCCCCAACGTCACCCTAGGGTGTGAAATTCGAGACTCCTGCTGGCACTCAGCCGTCGCCCTAGAGCAAAGCATCGAGTTCATAAGAGACTCCCTTGTGGCTGCTGATGAAAGTGAGGAGGCTGGGGGCGGGGCTAAATGTGCTGATCCTGGAGCCACGCCTATGAAGGGCAAGAAGCCAATCGTCGGGCTGATCGGTCCGGGTTCGAGCTCTGTGGCCATCCAGGTGCAGAATTTACTGCAGCTGTTTAACATCCCTCAGATCGCGTACTCCGCCACCAGTATGGACCTCAGCGATAAATCACTGTATAAATACTTTATGAGGGTCGTGCCGTCTGACGCCCAGCAGGCCAGAGCCATGGTGGACATAGTCAAGAGATACAACTGGACCTACGTGTCTGCCATCCACACAGAGGGTAACTATGGCGAGAGTGGGATGGAGGCGTTTAAGGAAATGGCGGGGAAAGAAGGCATCTGCATCGCTCACTCAGATAAGATCTGGAGTAACGCAGGCGAGCAGAACTTTGACCGCCTGCTGGTGAAACTGCGCAAGTATCTGCCCAAAGCTCGAGTGGTGGCCTGTTTCTGCGAGGGCATGACTGTACGAAACATCCTCATGGCCATGAGACGACAAAACCTGGTCGGAGAGTTTCTGCTGGTCGGCAGTGACGGATGGGCGGACCGCTATGATGTCACAGATGGTTATGTGCGCGAGGCGGCTGGCGGGATCACCATAAAGCTGCAGTCTGCAGATGTGAAGTGGTTTGATGATTATTACCTGAAGCTGCGTCCTGAAAACAACATGCGCAACCCCTGGTTCCCCGAGTTCTGGCAGCACCGCTTCCACTGCCGGCTGAAGGGACACGCGCAAGAGAACCACAAATACAACCGAACCTGCGGCAaGCGCGATTCTCTGCGCCAACAATACGCTCAGGACACCAAAATGGGTTTTGTGATCAATGCCATCTACAGCATGGCCCATGGGCTCCACAGCATGCAGAAATCTCTGTGTCCAGGCGTGGTGGGACTGTGTGATGCCATGAGGCCCATCGATGGGTCAAAACTCCTGGAGTTCCTCATGAAGACCAACTTCTCTGGAGTGACCGGAGAACACATTTACTTTGACGAGAACGGAGATTCACCCGGGAGTTACGTGATCATGAACTTTAAGAAGATGGGCAAGGATTATTTCGACTACACCAACGTGGGCAGCTGGGACAACAGTGGGCTGCAGATCGACGATGATGAGATCTGGCCCAGCAAAGAGGACATCATCAAATCTGTGTGCAGCGAGCCCTGTGATAAAGGCCAGATCAAGGTCATCCGCAAAGGAGAGGTGAGCTGCTGCTGGACCTGCACTCCCTGTAAAGACAATGAGTTTGTGTTCGACGAGTACACGTGTCGCGCCTGTGAACTGGGCTCCTGGCCCACCGACGACCTCATTGGCTGTGACCCGATCCCGGTGAAGTACCTGCGCTGGGGCGACCCTGAGCCGATTGCAGCAGTGGTATTCTCCTGCCTGGGTCTGATGGCCACGTTCTTCGTCATGTCTATCTTCATCATCTACCGGGACACCCCAGTGGTGAAATCCTCCAGCCGTGAGCTCTGCTACATCATCCTGGTGGGCATCTGTCTGGGATACCTGTGCACCTTCTGCCTCATCGCTAAACCGCATGTCATCTACTGCTACCTGCAGCGGCTAGGCATCGGATTATCGCCCGCCATGAGCTATTCAGCGCTGGTCACCAAAACTAACCGCATTGCACGAATACTCGCCGGCAGCAAGAAGAAAATCTGCACCAAAAAACCCAGATTTATGAGCGCTTGCGCTCAGCTGGTGATCGCATTTTTACTGATACTCTTGCAACTGGGTATAATCGTGGCGCTTTTCGTAATGGAGCCGCCTGACGTCATCCACGATTATCCATCAATCCGTGAGGTTAATTTAATCTGCAACACCACCAATCTAGGCGTGGTGGCGCCACTGGGATACAACGGGCTGCTAATCATGAGCTGCACATTTTACGCTTTTAAAACACGTAACGTTCCTGCCAATTTTAACGAAGCTAAATAcatcgcttttacaatgtacaccACTTGTATAATCTGGCTGGCGTTCGTGCCCATTTATTTCGGCTCCAACTATAAGACCATCACCATGTGCTTCTCTGTCAGCCTGAGCGCCACTGTGGCTCTGGGATGCATGTTTGTGCCCAAGGTGTATATTATTCTGGCTAAACCGGAGAGGAATGTGAGGAGCGCATTTACCACGTCTACTGTGGTGCGCATGCATGTGGGAGACGGGAAGTCGTCGTCGGCCGCCAGTCGATCCAGCAGTCTGGTTAACCTGTGGAAGAGAAGAGGATCATCTGGAGAGACACTCAGGTtgaacgctaagTCGGTGACGTGGGCCCAAAACGAGTGCAGTTCCAAAGGCACCCACCTGTGGCAGCGTCTCTCCTTTCACATCAAAAAGCGCGAAAGCAACCAGACGGCTGTGATCAAACCCTTCTCCAAGACATCTGAGGGACGCTACTGCGGAGGCAGCGACATAAACACGgacaacagcaacaacaagaTGCTCTATGAAGTCACGGAGGCGGAGGAACGCTACCCAATCACCTACCGGCCCCAAACGCCCTCTCCAATCAGCACCGTCACACAAAGAGCTAGCATCGCTTTAGCACAAAGCTCTGACGCGCAGGTCATGAGTGTTTCTACGTACATGTGCCAGCCTCCACAGCATCGCGTGCCATGTCCTGGCGGAAGCGCGTCACAGGGCTCTCTAATGGAGCAGATTAGCTGTGTGGTAAACCGCTTCACTGCTAACATCAGCGAGCTTAATAGCATGATGCTCACCAGTTCTCCTCCAGGGGGAGCTGTCGGTTTATCCACTAGCACTTCAGCACACGTCCACTCACCTGAACCATGCTGTCCACCATCTTACCGCCTGTCCCGGGAGGTTTCCCTACCATCCACTATGACAACCTATGCTGAAATACAGCCACTCCCACCGGTGGAGTCAAACGTGGGTCGAGCTGCCACCTCCTGCCATCTTTCTGGACCATCACGACTGAAAACATCTCCAACAACCAGTGGGAATGAGCTAAAAGTGGGAGTGGCATCAGCTCTGGAGTCGCCGTCCAATCAACCGGAGCTTGAGGAACTGCTGGCGCTGACTCCGCCCTCCCCCTTTAGGGACTCGGTTGGGTCAGGCAGCGCTTCACCCAGTTCTCCAACATCCGATGCTGAAACTTCAGTACTTCCGACCATCCCTAAATACGAGTGCCTGGTGCTGCGACACTACAGCCAAAGCTCGTCTTCATTATGA

Function

symbol description
grm5b Predicted to enable G protein-coupled receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Is expressed in brain and retinal inner nuclear layer. Orthologous to human GRM5 (glutamate metabotropic receptor 5).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090821-6 Predicted to enable G protein-coupled receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Is expressed in brain and retinal inner nuclear layer. Orthologous to human GRM5 (glutamate metabotropic receptor 5).

Ensembl:

ensembl_id ENSDARG00000102067

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018679 True 3588 mRNA 0.54 9 43656241 43768776

Neighbor

gene id symbol gene type direction distance location
XLOC_009518 CABZ01044962.1 coding downstream 4480 43651646 ~ 43651761 (-)
XLOC_009517 NA coding downstream 5718 43643844 ~ 43650523 (-)
XLOC_009516 ctsc coding downstream 30692 43604032 ~ 43625549 (-)
XLOC_009515 NA coding downstream 144169 43510550 ~ 43512072 (-)
XLOC_009514 prss16 coding downstream 328330 43286785 ~ 43327911 (-)
XLOC_009520 CABZ01073033.2 coding upstream 55896 43824672 ~ 43873005 (-)
XLOC_009521 chordc1a coding upstream 193038 43961814 ~ 43978141 (-)
XLOC_009522 nlrc3l coding upstream 213312 43982088 ~ 43995053 (-)
XLOC_009523 NA coding upstream 230754 43999530 ~ 44020074 (-)
XLOC_009524 NA coding upstream 248657 44017433 ~ 44017563 (-)
XLOC_009511 NA non-coding downstream 468698 43173142 ~ 43187543 (-)
XLOC_009509 BX890602.1 non-coding downstream 537050 43073923 ~ 43119191 (-)
XLOC_009528 NA non-coding upstream 350457 44119233 ~ 44123107 (-)
XLOC_009530 NA non-coding upstream 601791 44370567 ~ 44393774 (-)
XLOC_009536 CABZ01037147.1 non-coding upstream 981738 44750514 ~ 44750630 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000242_00078766_00137631 GRM5B, GRM5 coding CI01000242 null 78349 ~ 137654 (+)