CI01000049_01543239_01547533 (EEF1A1B, EF1A1, EEF1A1A, EEF1A1.L, EEF1A1)


Basic Information

Item Value
gene id CI01000049_01543239_01547533
gene name EEF1A1B, EF1A1, EEF1A1A, EEF1A1.L, EEF1A1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 1543102 ~ 1548019 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000049_01543239_01547533.mRNA
GTATATAGTGCTATATTATGTGGTTGTTTCAGTAGCCTACATCCGAGCGCAATTATAAATAACTTATTTGTATGATGAATTATTTAGTTTCGTTTTTTCCTGTTGTAGGCTGACTGTAACCCAATGAGAGCCCAGTAATGGGTAAGGAGAAGCTCCATATCAACATCGTGGTCATTGGCCATGTGGACTCAGGGAAGTCCACCACCACTGGCCACCTCATTTACAAGTGTGGAGGCATCGACAAGAGGACCATTGAAAAGTTTGAGAAGGAAGCTGCTGAGATGGGAAAAGGCTCCTTTAAGTACGCTTGGGTCCTTGACAAGCTCAAAGCTGAGAGAGAGCGAGGAATCACCATCGACATCTCCCTGTGGAAGTTTGAGACCAGCAAGTACTATGTCACCATCATTGATGCTCCAGGACACAGAGACTTTATTAAGAACATGATCACTGGCACCTCACAGGCAGACTGTGCTGTGTTGATTGTGGCAGCTGGCGTTGGTGAATTTGAGGCTGGTATCTCAAAGAACGGGCAAACACGTGAGCATGCCTTGCTGGCATACACCCTGGGTGTCAAACAACTGATCGTGGGCATCAACAAGATGGACTCTACGGAACCCAATTACAGCCAGAAGCGCTATGAGGAGATTGTGAAAGAAGTCAGCACTTATATCAAGAAAATCGGCTACAACCCCGATACTGTGGCATTTGTGCCAATCTCCGGATGGAATGGGGATAACATGCTGGAGGCCAGCCCAAATATGACCTGGTTCAAGGGCTGGAAGATCACTCGTAAGGATGGGAGTGCCTCTGGAACGACTCTATTGGAGGCTCTGGATGCCATTCAGCCTCCAACCCGCCCCACTGACAAACCCCTCCGACTCCCACTGCAGGATGTGTACAAAATAGGAGGAATTGGTACTGTGCCTGTGGGACGTGTAGAGACAGGCATTCTGAAACCTGGTCTAGTTGTGACATTTGCACCTGTGAACGTGACCACTGAGGTGAAATCTGTGGAGATGCATCACGAGGCTCTATCTGAAGCTCTTCCAGGGGATAATGTGGGATTTAATGTGAAGAATGTCTCAGTCAAAGATATCCGACGTGGGAACGTTGCAGGTGACAGCAAGAACGATCCTCCACAGGAGGCGGCGAGTTTCACGGCTCAGGTGATCATTCTGAACCATCCAGGTCAGATCAGTGCTGGTTATGCCCCAGTGCTGGACTGCCACACTGCTCATATTGCCTGTAAGTTTGCCGAGTTAAAGGAAAAGATTGACCGTCGCTCTGGGAAGAAGCTAGAAGACAATCCCAAGTCCCTGAAGTCTGGGGATGCTGCTATTGTAGATATGATACCAGGCAAACCCATGTGTGTGGAGAGTTTCTCTGAGTATCCTCCTCTTGGTCGCTTTGCAGTGCGTGATATGCGTCAGACCGTAGCAGTGGGCGTCATCAAGGGTGTTGAGAAGAAGACCCCTACCTCTGGGAAGGTCACAAAATCTGCCCAAAAGGCCCAGAAGAACAAATGAATGTTGTGCTGGGCTGCGAACACTTGGGTCAGCCACACCATCCCTCCTCTTTTCAACTCCATAAACAAAGCTTGGTTATTTATCAAAATGCATCGCAAAAGCAGAAGAAGGAAAAGTAAAACTTGCGCCTGCTTGACAATGATTACAATAGTGAAGTATGTTTATGTTTATTCATGTTTATTTTGAAATTTAAGTCTTTGTTGTGGTATTTGTTCTATTGTTAAATTGTTATAAGCACTTTAAGAAGATCTGCCTCTAGTGGGAGTGTGGAGTAAGCTTTGTTTATCCTGTATCCCAGCTTGTGTGCAATCCCTAAACCCTCTTGCTAACATTGCTTATGTGACCTTGCTTACAGTATTAGCTAACTGTTCCAGCTTCTAGTCCAATAGGTAGAACATTCTTTGTTAGTCTGTTCTGATTTGATGTGTCGTGATGTAGCTTTAAGTCTTTTTTTTGTGTGCATAGATTTTTTCTGTGTGCATGAAA

Function

symbol description
eef1a1a Predicted to enable GTPase activity and translation elongation factor activity. Acts upstream of or within heart development. Is expressed in asteriscus; brain; liver; muscle; and pleuroperitoneal region. Orthologous to several human genes including EEF1A1 (eukaryotic translation elongation factor 1 alpha 1).
eef1a1b Predicted to enable GTP binding activity; GTPase activity; and translation elongation factor activity. Predicted to act upstream of or within translational elongation. Is expressed in brain; liver; muscle; and pleuroperitoneal region. Orthologous to several human genes including EEF1A1 (eukaryotic translation elongation factor 1 alpha 1).
eef1a1 Enables protein kinase binding activity and tRNA binding activity. Involved in cellular response to epidermal growth factor stimulus and regulation of D-erythro-sphingosine kinase activity. Located in several cellular components, including cortical actin cytoskeleton; nucleolus; and ruffle membrane.

GO:

id name namespace
GO:1904714 regulation of chaperone-mediated autophagy biological_process

KEGG:

id description
K03231 EEF1A; elongation factor 1-alpha

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000049_01543239_01547533.mRNA True 2012 mRNA 0.46 7 1543102 1548019

Neighbor

gene id symbol gene type direction distance location
CI01000049_01487696_01510596 NA coding upstream 31631 1487291 ~ 1511471 (+)
CI01000049_01452500_01460899 METAP1D coding upstream 82109 1452500 ~ 1461018 (+)
CI01000049_01420749_01429016 BORA coding upstream 113732 1420749 ~ 1429370 (+)
CI01000049_01312448_01313521 GPR183B coding upstream 228013 1311994 ~ 1315089 (+)
CI01000049_01230521_01240488 TMEM41A, TMEM41AB coding upstream 302159 1230458 ~ 1240943 (+)
CI01000049_01660329_01663426 NA coding downstream 112148 1660167 ~ 1663426 (+)
CI01000049_01806674_01816408 SLC2A15B coding downstream 258655 1806674 ~ 1816536 (+)
CI01000049_01840330_01843844 FGF8B coding downstream 292311 1839815 ~ 1844077 (+)
CI01000049_01859017_01864022 POLL coding downstream 310998 1859017 ~ 1864302 (+)
CI01000049_01872550_01884275 NA coding downstream 324531 1872550 ~ 1885563 (+)
G206101 NA non-coding upstream 60105 1482782 ~ 1482997 (+)
G206076 NA non-coding upstream 124871 1417928 ~ 1418231 (+)
G206060 NA non-coding upstream 139194 1403685 ~ 1403908 (+)
G205850 NA non-coding upstream 296233 1246599 ~ 1246869 (+)
G206168 NA non-coding downstream 90640 1638659 ~ 1693546 (+)
G206127 NA non-coding downstream 108307 1656326 ~ 1658016 (+)
G206165 NA non-coding downstream 126349 1674368 ~ 1676549 (+)
G206199 NA non-coding downstream 177881 1725900 ~ 1726760 (+)
G206229 NA non-coding downstream 245226 1793245 ~ 1793480 (+)
G207888 NA other downstream 2075983 3624002 ~ 3624311 (+)
G208074 NA other downstream 2329377 3877396 ~ 3882211 (+)
CI01000049_04473766_04475768 GM10043, LSM6, SNRPF, BRAFLDRAFT_125735 other downstream 2925506 4473662 ~ 4476270 (+)
G209660 NA other downstream 5330114 6878133 ~ 6882030 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00011121 eef1a1l2,LOC107589444,LOC107706209,LOC105892153,LOC105027913 coding CM030133.1 CM030133.1 11962398 ~ 11966995 (+)