CI01000049_01872550_01884275


Basic Information

Item Value
gene id CI01000049_01872550_01884275
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 1872550 ~ 1885563 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000049_01872550_01884275.mRNA
ATGGGGACATTTCTGGAATTCTATGTCGACTTTGGTCTTGAATCTGGTCTCGCGTTTATGGTGGACACAGACATTATGCTTGGTAATGGCTGTGTGTGTTGTGTAAACTGTGAGGTGAAATTTCTGATCATGCCGATTCCCATTGAGATGAATGAATTTTGCCTGTGTAAGACTAAATGTGACCAAGCCTTAAGAGGTTTAGAGGAACTTAACAAAATATATGCTGAAATAAGGAGAAAAGGCTGTTGTACAGGAAGAGAATTCAGATGCTTAAGATGCTCGACCTTCTGCAAACTGTGGAGATTCCTACCCAACTATCTTCTTCCAGAATATGAGGAGGTAGTGCATCGGCCTGCTACGCCCCCTCCCCCATATAGTGCCTTAAACACCGGACCTCCAGTCTACACCAGCCCCCTAACCACTGACCAACAAGATGTGCAATGCCCACCCAGACAGATCACTCCAGTGCCCCCTGTATCTGACACGCTCTGTTCCAGACCCAGCCTAGAAGAGATCCATACCTCTAACGGGTACCACCAGAAAGACAACAGCAAGAGCGAGATAGAGTTAGAGCGAAGCAGGTCCACAGAGAGTGCCCTGCCCTTAGAGCAGCCTCCCAGCACGGACAAACAGAACGAGTGCAGGAAGGAGATGCTCAGCAATGTGGCAATGCCTGACGAGAAAGCGAGGATTCTGGGAAGGCACCGCAGATTTACAGGGGACTCCGGGATTGAGGTGTGTGTATGTGGGCGAGGCTTGAAAAACCATGAACCCAAAGAATTCGAGGGGCTTTTGAGTGAGGAGGACCAAGAGGACTCTGAGGACTTCTGTGAGGAATGTGGCCTCAATTCCTTCAGAGAGGAAAATCAGGGACTGCTATCCCCAGAAAACAGAGTGGAGTGTGGAGCATCACCACTGGCCCAATCTCAACCTCATCCGGTTTGCCTCTACTTGCATACTATTAATGAACAAGAGGGTAGCAGCACAGAATCTTAAAGCTGAATACATAACCTGACCAGTAAAAAAGAGTGAGTTGGTGAAAGAAAACGTGAGAGGATAACTGATATGTAGGGAAGCTGCAGTATGCAGTGGAGGAGCATACTGATGGAAGTATGTGATGGAAACATTTAGATGTTCTCCACATCTTTGTTTTATGTACAGAGCATCTATTTATGCAGTTGAAAGCCCAAATGTGTACAAGGATGGGCTCTACACCTCCATGGGGTGATGTACCATATGTGCTGCTTTAATGGCGCGTTTAAGTCCTCCTGTGAGGTTCGTATTTACGAACTGAGAAGTCGTAATGACTATGGCAGTGTGTTCGAAACTTCATGATCGTAAATACGATCTTTCAGACATGACTTGTAGGCACCATAAGACACATCCACCATGTAAAGATGCGGTCACATTTACAGTTGCTCTGTGAAATTTCATTTCAATAGCAATCTGTGTGATCAGAAGTTTTGCGTAAGGACGAAAAAGTTCCCCACAACAGATTCTGCTTTTATTCAAGGCGGACGCGTGAATTTGCTGTGATTCCCAGCAGAAAGCTGCTTGGTTTTAAAGTTTCTTCTGTGTTTGCTGTGCTTTGTACATCGCTACACTATTTCCAACGGAGCTTTTTTTTGCCAGTGAACTTTAGCTGAAATTTTGCTAATGTGACCGTGTCTTAACTTTGTAGTTAGTAGGATTGAGACGCTAAATACGTAAACACTGGTGTGCTGAACTATCAGTGTTTCAGGACAGTCAGAGAGAAATGTAAAAACTGACAGGACACCAAAAAAAAAAAAAAAAAAGACGTGCTTTTAAGGCCACAAATCCCTGTCGACTTTCCCCTAATGTAATGGGACAAATATTAATGGTGTTTATTACGTTTTTGTTTTGCACAATCACATTCTTCTGAATGAATCATATTCATGATAATTAATTTTAAATACAAAGTATTTACATACCAACAGTCTTAATTCACATTTCGTCTGTTTATATTGTCTTTCTTTTGTTTTTGCTGCTGTAAGCTCTGATTTAATGTGTATTCAGAACAAGTTTGATTCATAAATATAAGTTTTCATAGCCAACGTAGGCTATACAGATGACATGGGACAAATATTAGCATTAACTTGGAGCTTGAAAGTGTTGCATTATTACTAACTGATTGCATACGAGCACTACATGATGTATGTTCCTTTGAACCTGTAGGGATAAAAGCCTTGCCAAAGGGAGTGGAAGTCAGTTGAAAGTCAGTTCTTATAGGTGCTTAATCCATTGATGTAAGCTGCAAAGTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000049_01872550_01884275.mRNA True 2284 mRNA 0.43 3 1872550 1885563

Neighbor

gene id symbol gene type direction distance location
CI01000049_01859017_01864022 POLL coding upstream 8248 1859017 ~ 1864302 (+)
CI01000049_01840330_01843844 FGF8B coding upstream 28473 1839815 ~ 1844077 (+)
CI01000049_01806674_01816408 SLC2A15B coding upstream 56014 1806674 ~ 1816536 (+)
CI01000049_01660329_01663426 NA coding upstream 209124 1660167 ~ 1663426 (+)
CI01000049_01543239_01547533 EEF1A1B, EF1A1, EEF1A1A, EEF1A1.L, EEF1A1 coding upstream 324531 1543102 ~ 1548019 (+)
CI01000049_01887038_01898993 AS3MT coding downstream 1475 1887038 ~ 1899133 (+)
CI01000049_01903989_01944942 CNNM2, CNNM4, CNNM2B coding downstream 18426 1903989 ~ 1944942 (+)
CI01000049_01984867_01987314 INAB coding downstream 99254 1984817 ~ 1988047 (+)
CI01000049_02023778_02026778 NA coding downstream 138215 2023778 ~ 2027079 (+)
CI01000049_02043240_02052315 ANOS1A coding downstream 156915 2042478 ~ 2052501 (+)
G206269 NA non-coding upstream 5224 1867053 ~ 1867326 (+)
G206267 NA non-coding upstream 21431 1850438 ~ 1851119 (+)
G206229 NA non-coding upstream 79070 1793245 ~ 1793480 (+)
G206199 NA non-coding upstream 145790 1725900 ~ 1726760 (+)
G206165 NA non-coding upstream 196001 1674368 ~ 1676549 (+)
G206253 NA non-coding downstream 60787 1946350 ~ 1947443 (+)
G206252 NA non-coding downstream 79610 1965173 ~ 1971043 (+)
G206286 NA non-coding downstream 95987 1981550 ~ 1981784 (+)
G206301 NA non-coding downstream 118121 2003684 ~ 2003896 (+)
G206318 NA non-coding downstream 187876 2073439 ~ 2073732 (+)
G207888 NA other downstream 1738439 3624002 ~ 3624311 (+)
G208074 NA other downstream 1991833 3877396 ~ 3882211 (+)
CI01000049_04473766_04475768 GM10043, LSM6, SNRPF, BRAFLDRAFT_125735 other downstream 2587962 4473662 ~ 4476270 (+)
G209660 NA other downstream 4992570 6878133 ~ 6882030 (+)
CI01000049_07219171_07224229 NA other downstream 5333285 7218811 ~ 7224268 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000375 wbp1lb coding NC_007112.7 CM002885.2 31674297 ~ 31699955 (+)