Gene
RNA
| Item | Value |
|---|---|
| gene id | G206165 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000049 |
| NCBI id | null |
| chromosome length | 9665442 |
| location | 1674368 ~ 1676549 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU234012 | True | 2134 | lncRNA | 0.37 | 2 | 1674368 | 1676549 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000049_01660329_01663426 | NA | coding | upstream | 10942 | 1660167 ~ 1663426 (+) |
| CI01000049_01543239_01547533 | EEF1A1B, EF1A1, EEF1A1A, EEF1A1.L, EEF1A1 | coding | upstream | 126349 | 1543102 ~ 1548019 (+) |
| CI01000049_01487696_01510596 | NA | coding | upstream | 162897 | 1487291 ~ 1511471 (+) |
| CI01000049_01452500_01460899 | METAP1D | coding | upstream | 213375 | 1452500 ~ 1461018 (+) |
| CI01000049_01420749_01429016 | BORA | coding | upstream | 244998 | 1420749 ~ 1429370 (+) |
| CI01000049_01806674_01816408 | SLC2A15B | coding | downstream | 130125 | 1806674 ~ 1816536 (+) |
| CI01000049_01840330_01843844 | FGF8B | coding | downstream | 163781 | 1839815 ~ 1844077 (+) |
| CI01000049_01859017_01864022 | POLL | coding | downstream | 182468 | 1859017 ~ 1864302 (+) |
| CI01000049_01872550_01884275 | NA | coding | downstream | 196001 | 1872550 ~ 1885563 (+) |
| CI01000049_01887038_01898993 | AS3MT | coding | downstream | 210489 | 1887038 ~ 1899133 (+) |
| G206127 | NA | non-coding | upstream | 16352 | 1656326 ~ 1658016 (+) |
| G206101 | NA | non-coding | upstream | 191371 | 1482782 ~ 1482997 (+) |
| G206076 | NA | non-coding | upstream | 256137 | 1417928 ~ 1418231 (+) |
| G206060 | NA | non-coding | upstream | 270460 | 1403685 ~ 1403908 (+) |
| G206199 | NA | non-coding | downstream | 49351 | 1725900 ~ 1726760 (+) |
| G206229 | NA | non-coding | downstream | 116696 | 1793245 ~ 1793480 (+) |
| G206267 | NA | non-coding | downstream | 173889 | 1850438 ~ 1851119 (+) |
| G206269 | NA | non-coding | downstream | 190504 | 1867053 ~ 1867326 (+) |
| G206253 | NA | non-coding | downstream | 269801 | 1946350 ~ 1947443 (+) |
| G207888 | NA | other | downstream | 1947453 | 3624002 ~ 3624311 (+) |
| G208074 | NA | other | downstream | 2200847 | 3877396 ~ 3882211 (+) |
| CI01000049_04473766_04475768 | GM10043, LSM6, SNRPF, BRAFLDRAFT_125735 | other | downstream | 2796976 | 4473662 ~ 4476270 (+) |
| G209660 | NA | other | downstream | 5201584 | 6878133 ~ 6882030 (+) |
