CI01000049_03292042_03304890


Basic Information

Item Value
gene id CI01000049_03292042_03304890
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 3292042 ~ 3305101 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000049_03292042_03304890.mRNA
GGATTTTCAAGCAGTCCTCTTCTCGCTCTGAAGTCTTTTACGTGTGTTCTGATCGACTCGTCTCATGGTCAATGCACAGTCACTAACACGAGGCAAGTTTGTAAGACTGTACTGAAGCATTTTGATGCACAGTACAGTGAAGAGCTTGGAGAGCAGTGGTGTAGTGCAAGGGATGTGCTTCTGAATCCACTCTCATGGCAATACGGTGTCCTGCTTAATCGCTTCAGTGACCTTACAAACCTCAAGCAGTGTTTCACAGCACTTGGATACACAAACCTCCTTCCACAGACACATCCTGAATCCCAGTCCCATACGACACACATCCCCCTGCAGTGTTTTATTCATCGGGATCCAGTGCGTATTCCCACCCAAGGCCACCACCCAGGCTGGTTAAAACAGTATTACCTCCTGAATGCAGCCTCTCTTCTCCCAGTATTGACTTTGAATGTGAAGGAAGGAGAAAATGTGCTTGATCTCTGTGCTGCTCCTGGGGGGAAAAGTCTGGCCATATTACAGGCAGCCACTCCTGTTGGCGTAACACTTAGTGCAAGCCCTTACTTTCCATCTCAAAGCAACCAAAAAGCTGCAAGGTGGAATAGAGGTTTTCTGCACACTCAGTCATTTGAAGGCAAAGCTGCATATATGCTTAAGGTCCCTGGGACCCTCGATGGAGGGGACACAGCTACTCTCTCATTTACTCAGCCGGTCTCACAAAGGATGGTGCTTGTAGATGCCCCGTGCTCTAATGACCGGAGTTGGCTTTATACCCCTGATACCCACCAAGGGGAAATGTGGCTGAAGGAGAGAACTCAACTACCACTCTTACAGAAGGAGCTGCTCTGTTCGGCACTAGCAGCAGTGCGTCCTGGAGGAGTGGTTGTCTACTCCACTTGCACCATGTCACGAGCCGAGAACCAATCAGTTGTAGAGGCTGTCCTTGCGTCTTATCAAGGAGTGGAGCTTCTGGACCTGGATCAACAGTTAATTGACTCTTTGTCTGATCATTTCTACTTTGCTCACCTCCGTCCTTCAGTGGGACAGTTAGTGATCCCGCAAAAAGCTGAACTGCTTGAGGAGGTTTTGCTGTTGTCAGCCTTAGAGCTCAATGACAAATTGCTTCTAATGAAACTTAAGAGTTTTTCTGAATCATGGAAGAGCACACCTTGAATGTTTACCATTAATATGATATATGAAAATAAGATTGCAAGCACCTCTTAGACAAGGTGTATACATTTAAGGAACAGTCTGTAAGTGCTGTAACAGCAGCATTGTTAGCTTTATTTTTTATTAAAAAACTTCAGCAGAGTACACAGGGTTATGCATTAACAGCATTGTCTTAAGAGGTCATCAGTGCTTGTTGTTGCTATTACAACTATAA

Function

NR:

description
Zgc:109983, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000049_03292042_03304890.mRNA True 1378 mRNA 0.46 9 3292042 3305101

Neighbor

gene id symbol gene type direction distance location
CI01000049_03279568_03285640 ARL13B coding upstream 5857 3279568 ~ 3286185 (+)
CI01000049_03259617_03273490 NA coding upstream 17451 3259174 ~ 3274591 (+)
CI01000049_03253972_03255119 HTR1FB, HTR1F coding upstream 36902 3253972 ~ 3255140 (+)
CI01000049_03247914_03248937 NA coding upstream 42991 3247914 ~ 3249051 (+)
CI01000049_03214802_03219475 CHMP2B.L, CHMP2BA, CHMP2BB, CHM2B, CHMP2B, CHMP2B.S coding upstream 72456 3214524 ~ 3219586 (+)
CI01000049_03475307_03572415 EPHA6 coding downstream 170206 3475307 ~ 3572415 (+)
CI01000049_03584412_03585910 ARL6 coding downstream 276931 3582032 ~ 3586099 (+)
CI01000049_03593799_03605097 SLC5A7 coding downstream 288626 3593727 ~ 3606491 (+)
CI01000049_03631096_03632219 KCTD12.2 coding downstream 324276 3629377 ~ 3632370 (+)
CI01000049_03756695_03758838 KLF12 coding downstream 451322 3756423 ~ 3759295 (+)
G206659 NA non-coding upstream 186703 3103635 ~ 3105339 (+)
G206656 NA non-coding upstream 205905 3084546 ~ 3086137 (+)
G206654 NA non-coding upstream 210599 3080980 ~ 3081443 (+)
G206723 NA non-coding upstream 229838 3061979 ~ 3062204 (+)
G206721 NA non-coding upstream 231312 3060442 ~ 3060730 (+)
G206787 NA non-coding downstream 8384 3313485 ~ 3313916 (+)
G206788 NA non-coding downstream 17629 3322730 ~ 3323199 (+)
G206789 NA non-coding downstream 18465 3323566 ~ 3323905 (+)
G206805 NA non-coding downstream 32478 3337579 ~ 3338144 (+)
G206806 NA non-coding downstream 33080 3338181 ~ 3338381 (+)
CI01000049_01840330_01843844 FGF8B other upstream 1448214 1839815 ~ 1844077 (+)
G207888 NA other downstream 318901 3624002 ~ 3624311 (+)
G208074 NA other downstream 572295 3877396 ~ 3882211 (+)
CI01000049_04473766_04475768 GM10043, LSM6, SNRPF, BRAFLDRAFT_125735 other downstream 1168424 4473662 ~ 4476270 (+)
G209660 NA other downstream 3573032 6878133 ~ 6882030 (+)
CI01000049_07219171_07224229 NA other downstream 3913747 7218811 ~ 7224268 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000399 nsun3 coding NC_007112.7 CM002885.2 33697170 ~ 33722780 (+)