CI01000049_03584412_03585910 (ARL6)


Basic Information

Item Value
gene id CI01000049_03584412_03585910
gene name ARL6
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 3582032 ~ 3586099 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000049_03584412_03585910.mRNA
GTATATATAGCAAACAATAATATAAACCATTTTCACACAATAAACATTGAGGTTATGTTTACTCTTATGTTAGATTGTCATAGTTTAAAAAGTAAATTATTTTTATAATTGAAAACCTGGGAATTGGACAAGGGTAAAAACAAAATCATAAAAGGCATTTTTAGTACTACTAATTATAGGCTAATATAGAAAGAAAGAAAGAAAGGTCTCATAGCCTATCTTGTAATAAAAATCATCCCCTGCTGCGTGGGACATAAAAGTGCCATAAGATGAAGAAATACCCATATATTTTTGAAAGTTTAAATCATGTTTATAATGTATAAAGTTATACACAAAGCTACTGTTCTCTACTGTTCTGACATTGTCCATCGGATGGCGCTATTAAGCAATCATCCCAGTCAAAAAGCGTCATCGGTCTCCTAGCAGCGGCGTGTGAGAGTTTCCACGACGCCAGGTTAGTGTTTACGTCTCTCCATCTGCACTGGACATAACATCAATCAGATGAGTGAGACTTTTGTATGCGAAATTAATTTTTAACCAAGACGCAGTCAACATACAACTTGAGCCGAGCCGGAGCAGAAAAGTAAGAAGCTCTTTCCATGTACAGCAGACTGATAGAGCAAGTTAGCCAGCCAGACAGCTAGTCGTCATCCGCAACGGATATGTAAACAATAACCTTAAATTATAAGAAAATATGCCAACCTTGTGTTGTCTTTATGTGGATTTTTTGAGTGTTTAATGGAATAGACGTCAGAAGACAGAAATGTTTGAATTATTTTAGCATAACTGTACTCGTACATGTGAAGCGCTAGCCCGTGTGCTAATGAGCTCAGAGGATTACAGGCTCTTGTCGTAGATTACGCTTTTACTCTTGTCCGTTCATGTGTTTCTGACCTAACGTTACGACACTATGAGAGATGTGGATAAATACGTTAAACGGTGTAAGTTTCGCTGTTGTCATTGGACTGATTGATTGATGAATAGATGGTTGTGTAACGCTATGTTATGCGACTGAAATTTCATTTTCATTTAGTCCGACACAACAGGTGGTTGTTTTTTTAGACCCAAGATACGGGTATACAAATACCCCGAATTTACAAATTCGACTAATATATGCACGTAAAGAATTGGGTTCATGTACTACAGATTTTAGTGCATGTTACTAGCTGTGTGTCTGCTCGCAGCTCAAGTTAATTCACTTAAATCCGATTATTATTATTATTATTATTATTATTATTTATTATTATTATTATTATAAAAAAAAAAAAAAAGAAGCAAATAAGCTTATTTTCTTATCAGACTTCTGGCCCCTGAGAGCCAACAGTGCCCCCATCTCCATCAAATATTTGAACACTTTCAGATTATAACAGCCTTTAATATTAAAACAATAAATCAGTGTTGTTGTTAAATTGTTTACTATTGTAGGTCTATACTATATAAAAACGTATAGGGGGGGAATCAGATTACAGATCACTGATTCCACATAAATATTAAGCAGCACAACTGTTTCAATGTTGATAATAATAAGAAATGTTTCTTTTCTCAATGGATATCAGAATGATTTCTGAGGGATCATGAAACTCTTGAAGAGTGAAGACTGGAGTAATGATGCTGAAAATTAGGCTTTGCCATCACAGGAATAAATTACATTTTAAAACATGTTAAAATAGAAAAACAGTTTTAATTTAATTTTTAATTGTAATAATATTTGAAAACATCACTCTTTTTTTCTGATCAAATGAATGCACTACAGCCTTTGTAAGCATAAAAGAATGGTAACGCTTTACAAGGTTCTTTAGTTAACATTAGTTAACTACATTAGTTAACATGAACTAATAATGAACTGCACTTATACAGCATTTATTAATCTTTGTTAATGTTAATTTCAACATTTACTAATACATTATTCAAATCAAGAGTCCTATTTGTTACTATTAGTTAATGAACTGTGAACAAACTAACAATGAACTGCTGTATTTTCATTAACGTTAACAAAGATTAACAAATACAGTAACAAATGTATTGCTCATGGTTAGTTCATGTTAGTTAATACATTAACTAATGTTAACAAATGAACCTCATAATAAAGTGTTATCAAAAGAATTAATAGCATAATAGTCTCCCAGCTATATTTTATACGTATATATATATATATATATATATATATATTTTTTTTTTTTTATTATTATTTTTTTTTTTTTTTCATTTAAGCAGCTGAGATCTCCCCACAGCAGTTGGTGTCCTGACGTAGACTGTGAAAAAAAGAGATGTTTCTGTTGTCCCAAGTGTTTATCGTCCTCTGGATGCATCTAACGAATAATCTAATCAAGCTTGCTTTTGATGTGATCTCTTTCCAGAAGCGCCCCTTCCAACTAGGCAAATGGGGCTTTTTGACAAGCTTGCAGGGTGGTTGGGTCTGAAGAAGAAGGAAGTGAACGTGCTGTGTTTAGGTCTGGACAACAGTGGAAAAACTACCATCATCAACCAGCTAAAGCCATCCAATGCTCAGGCTCAAGACATTGTCCCAACCATAGGCTTCAGCATAGAAAAGTTTAGGACCTCAAGGGAGGGTCAGGCCATCATTTTTGTGATTGACAGTGGAGATAAACTAAGAATGGTGGTGGCAAAAGAGGAATTGGATACCCTTTTGAATCACCCTGATATTAAGCACAGAAGGATACCTATACTCTTTTTCGCCAACAAGATGGACCTCAGGGATGCGTTATCAGCAGTAAAGGTCTCTCAGCTCTTGTGTCTGGAAAACATTAAGGACAAGCCATGGCATATCTGGTAAGAAAACTAAATTATTTTCAGTTCGAATTTTCTGCTTGCATTGAAATAATTTGAATAATTTATAGGTCCAAAGCTCCGTTCTGACAGGATTTATTTTCTAAACAGTGTTCGAATTACAGTTATTACCAGCACATCTGTAGTTCGAAGGGTCTATTTGTCTGGATGTGGGCGAAATGGAAGGTCATGTGAA

Function

symbol description
arl6 Predicted to enable GTP binding activity. Involved in cilium assembly. Acts upstream of or within several processes, including Kupffer's vesicle development; melanosome transport; and pectoral fin development. Predicted to be located in ciliary membrane and cytoskeleton. Predicted to be active in axoneme. Is expressed in adipose tissue; brain; eye; heart; and retina. Human ortholog(s) of this gene implicated in Bardet-Biedl syndrome; Bardet-Biedl syndrome 1; Bardet-Biedl syndrome 3; and retinitis pigmentosa 55. Orthologous to human ARL6 (ADP ribosylation factor like GTPase 6).

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K07951 ARL6, BBS3; ADP-ribosylation factor-like protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000049_03584412_03585910.mRNA True 2983 mRNA 0.34 4 3582032 3586099

Neighbor

gene id symbol gene type direction distance location
CI01000049_03475307_03572415 EPHA6 coding upstream 9617 3475307 ~ 3572415 (+)
CI01000049_03292042_03304890 NA coding upstream 276931 3292042 ~ 3305101 (+)
CI01000049_03279568_03285640 ARL13B coding upstream 295847 3279568 ~ 3286185 (+)
CI01000049_03259617_03273490 NA coding upstream 307441 3259174 ~ 3274591 (+)
CI01000049_03253972_03255119 HTR1FB, HTR1F coding upstream 326892 3253972 ~ 3255140 (+)
CI01000049_03593799_03605097 SLC5A7 coding downstream 7628 3593727 ~ 3606491 (+)
CI01000049_03631096_03632219 KCTD12.2 coding downstream 43278 3629377 ~ 3632370 (+)
CI01000049_03756695_03758838 KLF12 coding downstream 170324 3756423 ~ 3759295 (+)
CI01000049_03843068_03843461 NA coding downstream 256753 3842852 ~ 3843545 (+)
CI01000049_03844455_03850424 GPALPP1 coding downstream 258356 3844455 ~ 3850430 (+)
G206829 NA non-coding upstream 210694 3371097 ~ 3371338 (+)
G206828 NA non-coding upstream 212635 3369113 ~ 3369397 (+)
G206827 NA non-coding upstream 213513 3368308 ~ 3368519 (+)
G206824 NA non-coding upstream 218985 3362789 ~ 3363047 (+)
G206823 NA non-coding upstream 220498 3361069 ~ 3361534 (+)
G207876 NA non-coding downstream 5358 3591457 ~ 3591837 (+)
G207889 NA non-coding downstream 41850 3627949 ~ 3628174 (+)
G207989 NA non-coding downstream 55153 3641252 ~ 3641553 (+)
G207995 NA non-coding downstream 74782 3660881 ~ 3866543 (+)
G208019 NA non-coding downstream 124652 3710751 ~ 3711934 (+)
CI01000049_01840330_01843844 FGF8B other upstream 1738204 1839815 ~ 1844077 (+)
G207888 NA other downstream 37903 3624002 ~ 3624311 (+)
G208074 NA other downstream 291297 3877396 ~ 3882211 (+)
CI01000049_04473766_04475768 GM10043, LSM6, SNRPF, BRAFLDRAFT_125735 other downstream 887426 4473662 ~ 4476270 (+)
G209660 NA other downstream 3292034 6878133 ~ 6882030 (+)
CI01000049_07219171_07224229 NA other downstream 3632749 7218811 ~ 7224268 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location