CI01000049_06475969_06494373


Basic Information

Item Value
gene id CI01000049_06475969_06494373
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 6475850 ~ 6494644 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000049_06475969_06494373.mRNA
TTATAAATAGCACACTGTCCGAATGTTTGACGAGCGCTGATCCTTGGCGAGCAGGAACGGGGAACTCAGCTTCCTCTTTTCCATTTGTTTGACCTACAATTTCAGCAGTGCCGCCCAAAATGAGGGGCCTCTACTTTACCTCAGACATGCCGCCATTAATAACCGTTCAAAGCCACCGTCTGCCTTTCTTTGATGGACACAGCTCTATTAGACCCCATTTAGCCATTCACTTCTCTTCCTTCCTACAACACGCAACTCCTGTCCAACTACATCGCACCCCCTTCACCCGACTCCGCCATTGTGAGCCGACGCAGCAAAGAGACATTGATGGACGCCTCTCAGCAAACCTTTCGTACTCTCCTTATTCTCTCAGCACATCACATTTTTACTTGAACAGAGCACACTGTATCCCAGTATACTGCGGGGGTGTTCTTATAGCGACCCTGCTGTATCAAACTGCCATCAAAGAAGGCTATATGAGTAACACAGAAGAGCGCAGGAAGTTGAGCAATGGTTTTGTCTTTCTGGAAAGGCTGCTGCACATGCATATCATTGTGTTTCATCTTATCTATGTTCAAGAAAAAGGATTTTGTGATCAACCATCCAATCAGCACCAGCAGGGCCAGTCCACACTGCCACCAGTGCCGCCTCCGCACAAGCAGCAGCCGTCGGTGACGGCGCTGAACCACAACTCTCTGAGTAGCCGCAGGAACGTGAGCCCGGCCCCTCCGGCCGCCCTCCCCGCCGAACTGCAAACCACACCCGAGTCAGTGCCGCTGCAGGACAGCTGGGTCCTGGGCAGCAATGTGCCGCTGGAGAGTAGAAAATTAGCAAAGCAAGCAGTTCTTGAAAACGGGCATGACAACTTAATAGAGATGGATGTGTTCCCTCCCGTGTGCCACGAGGGCGGCTATGGGGACGGGTATGTGCTCCTGAGTTTTCTCATGGTGCCAGCTGCTGATGCCAAAGCCCAACACTGAGCCAACCAAAGTGCTAAATCTCCAGACTCCCCACCCCAACACAGCCACCCCCAAACAGAAGGCCAGCGCTGAGCCAACCAAATGGACAAAGTCCCATATTGAGCCAACCGAATTTAGACAAAGCGGTCATGTACTGACCCAAGCACCTATCGTATATCTCTTTTCCCTTGTTCAGTTAGCCAATGAATGTAAATTATCAAGAGGCATTTGATTGGCAGCCGATTCTGACACTGGTACTTGCTTAGGAATAATTGCTCTAAATTAAGTTGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000049_06475969_06494373.mRNA True 1251 mRNA 0.50 6 6475850 6494644

Neighbor

gene id symbol gene type direction distance location
CI01000049_06466105_06468489 NA coding upstream 5061 6466105 ~ 6470789 (+)
CI01000049_06385432_06392281 NA coding upstream 82869 6384525 ~ 6392981 (+)
CI01000049_06307987_06341121 NA coding upstream 134509 6306184 ~ 6341341 (+)
CI01000049_05910501_05913204 SPCS3.L, SPCS3 coding upstream 562589 5910501 ~ 5913261 (+)
CI01000049_05878283_05898645 WDR17 coding upstream 576839 5878283 ~ 5899011 (+)
CI01000049_06507924_06593757 TENM3 coding downstream 11812 6506456 ~ 6594193 (+)
CI01000049_06640279_06646602 IRF2A coding downstream 145635 6640279 ~ 6647425 (+)
CI01000049_06661207_06662847 NA coding downstream 166311 6658981 ~ 6663065 (+)
CI01000049_06716361_06716960 NA coding downstream 221717 6716361 ~ 6717446 (+)
CI01000049_06718088_06721288 AIP coding downstream 223444 6718088 ~ 6721358 (+)
G209621 NA non-coding upstream 180790 6294505 ~ 6295060 (+)
G209618 NA non-coding upstream 184306 6291319 ~ 6291544 (+)
G209612 NA non-coding upstream 195162 6280347 ~ 6280688 (+)
G209507 NA non-coding upstream 399764 6075845 ~ 6076086 (+)
G209502 NA non-coding upstream 410826 6064822 ~ 6065024 (+)
G209519 NA non-coding downstream 123962 6618606 ~ 6619512 (+)
G209632 NA non-coding downstream 126702 6621346 ~ 6621654 (+)
G209636 NA non-coding downstream 130857 6625501 ~ 6625753 (+)
G209637 NA non-coding downstream 131313 6625957 ~ 6626331 (+)
G209639 NA non-coding downstream 133717 6628361 ~ 6628560 (+)
CI01000049_04473766_04475768 GM10043, LSM6, SNRPF, BRAFLDRAFT_125735 other upstream 1999580 4473662 ~ 4476270 (+)
G208074 NA other upstream 2593639 3877396 ~ 3882211 (+)
G207888 NA other upstream 2851539 3624002 ~ 3624311 (+)
CI01000049_01840330_01843844 FGF8B other upstream 4632022 1839815 ~ 1844077 (+)
G209660 NA other downstream 383489 6878133 ~ 6882030 (+)
CI01000049_07219171_07224229 NA other downstream 724204 7218811 ~ 7224268 (+)
G210091 NA other downstream 1379106 7873750 ~ 7878856 (+)
CI01000049_08326623_08329601 NA other downstream 1833308 8326285 ~ 8329915 (+)

Expression


Co-expression Network