CI01000049_05878283_05898645 (WDR17)


Basic Information

Item Value
gene id CI01000049_05878283_05898645
gene name WDR17
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 5878283 ~ 5899011 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000049_05878283_05898645.mRNA
ATGAGGCAAAGGGAGCAGCATAAACACCTTCAAGGAGGCTGTGCAGGGTCGCTAACGCGGAGCCCTGTTTGGCTTTGCGTCTGTGAAGGCGAGAGGATAAAAGACATGGAAAGCCTGTGCTGGTTCAGCAAATATCACAATGAACCAAAGGTAAAGATGTCTCAGGTGAAGCAGGTTGGCCTGCTGGCCGCTGGATGTCAGCCTTGGAATAAAGACGTGTGTGCTGCCAGTGGGGATAGGTTTGCGTATTGTGCCACGCTTGCCATATATGTGTACCAACTTGATCACAGATACAATGAGTTTAAGCTGCGAGCAATCATGTCTGAACACAAGAAGACAATCACAGCTATATCGTGGTGTCCACACAACCCTGAAGTGTTTGCTAGTGCGAGTGCTGATAACCTGCTCATCATTTGGAACGTGGCCGAGCAGAAGGCCATTGCACGGCTAGATAACACCAAAGGTATTCCAGCTTCTCTAAGCTGGTGCTGGAATGCAGGTGACAGCGTTGCGTTCGTATCCCACCGGGGTCCTCTGTACATATGGACCATCTCTGGGCCTGACTCAGGAGTCACTGTGCACAAGGAGGCTCACAGTTTCCTCTCGGATATCTGCCTGTTTCGCTGGCATCCGTTGAAGAAGGGAAAAGTGGTGTTTGGACACACTGATGGCAGTCTGTCCATCTTTCAGCCAGGCTCAAAGAATCAGAAGCACGTACTGCGGCCCGAGTCGTTAGAAGGCACAGATGAAGAGGACCCCGTCACAGCTCTAGAGTGGGACCCTCTCAGCACAGACTACCTACTGGTGGCCAACATGCACAATGGCATCCGACTGCTGGACTCTGAGTCTTTATCCTGCATTACTACCTTTAGTTTCCCTAGTGCTGCTGCTTCCGTGCAGTGTCTGGCATGGGTGCCCAGCGCCCCTGGCATGTTTATCACAGGGGCGTTTAGCTCAAATTCCCCTTCCAAGAATCACTACACCTCCTCCACTAGCGAGGCTGTGCCTCCACCTACTCTTTCACAGAACCAGGCCTTCTCTCTCCCACCCGGCCATGCTGTCTGCTGTTTCATGGATGGGGGTGTCGGGCTGTATGACATGGGTGCCAAAAAGTGGGACTTCCTGCGGGATCTGGGTCATGTTGAAACTATCTTTGACTGCAAATTCAAGCCAGATGACCCAAACATTCTAGCTACAGCTTCATTTGATGGGACGATAAAAGTCTGGGATATAAACACCTTAACTGCTGTGTACACATCTCCAGGCAATGAGGGAGTGGTTTACTCTCTGTCCTGGGCCCCTGGAGACTTGAACTGCATAGCAGGTGCTACGTCAAGAAATGGCGCCTTCATTTGGGATGTTAAAAAGGGGAAAATGATCACAAGATTTAATGAGGCAAGCATTGAACAGAATTTACAACATGGGAAGAATGGTATTTTTTGTGTTGCTTGGAGTCATAAGGATTCCAAAAGAATAGCCACATGCAGTGGAGATGGATTTTGCATAATTCGAACCATTGACGGCAAAGTGTTGCACAAATACAAACATCCAGCAGCAGTGTTTGGCTGTGACTGGAGTCAAAATAACAAAGATATGATTGCCACAGGCTGTGAAGACAAGAATGTTCGAGTCTATTACCTGGCCACCAGTTCTGACCAGCCACTAAAAGTCTTTACAGGTCACACGGCCAAAGTATTCCATGTGCGCTGGTCACCTCTCAGAGAGGGCATACTGTGCAGTGGCTCAGATGATGGGACTGTCCGTATCTGGGATTATACCCAAGATGCTTGCATTAACGTGCTGAGTGGCCACACTGCTCCAGTTCGGGGTCTCATGTGGAACACAGAGGTGCCATACCTTTTGACTTCAGGGAGCTGGGACTACACCATCCGTGTCTGGGACACTAGAGACGGCACATGTCTAGACACCGTATATGACCATGGAGCTGATGTCTATGGTCTGACATGTCACCCCAGCCGTCCATTCACCATGGCTTCCTGCTCCAGAGATTCTACGGTCAGACTTTGGTCACTTACGCCTCTAATTGCTCCCTTAGTGGTCAACATCCTTACTGACCACAGTTGGGATGACATCATTGGCAACACAGATCGTGCTATGGTTCCTGGAGCCCCTCCCCTCCTGTGTGGAAAAGTTTCCAGAGATATCAAACAGGAGCTGGATAAACTCTCTAGCGATGTGCGCATGAAGAAGCTCAGATGGTTCTCTGAGTGTTTCTCACCACCAGGAGGGAGTCATAACCTGTGGGATCTGGTTGCTGTTATCAACGGGCAGGATGATAGTCTTCTTCCTCAGAACTATGGGCAGGGCATCATGCATATGAAACACCTGGTCCGCTTCAAAACTTCTGAAGCACAAGAGCTGACTATAGTAAAGATGTCAAAGTTTGGGGGTGGGATTGGAGCACCTAGTAAAGAGGAAAGGCTCAAGAATGCAGCAGAAATCCACATCAGACTGGGTCAAATCCAGAGATACTGTGAGCTTATGGTGGAACTGGGAGAGTGGGAGAAGGCTCTTTCTGTGGCCCCTGGTGTCTCCATGAAATACTGGAAAAAGCTCATGCAAAGGAGAGCAGACCAGCTCATGCAAGAAGGCAATGATGATGTCATCCCATACTGCATCGCCACTGGTGAGGTGAAAAAGCTGGTGAATTTCTTCACCTCTAGAGGTCAGCTGAAAGAAGCTGTGCTGGTGGCTCAGGGTGCTTGTGAGGGTAATATCCATGGCCCTCAGATCACATCAATAAACAATGCCGCAAACTCAGACAATGACAACATAGAAAAATACTGCGGGATGTTGCACAGAGTGTGTAAAGAGCTGGCAGAGTGGTATTTCCAAGATGGCCGTGCTGTGTTGGCAGCTTGCTGTCATCTAGCTGTAGACAACACAGAATTGGCTATGGCGTCTCTGATCAGAGGCAATGAGCTGGAGCTGGCAGTGTGTGTGGGCACGGTCCTGGGAGAATCAGCCAGTAAAGCCACCCACTACGTTCTGGAGCTCTTGGCCAGGAAATACATGACCACTGCCACCTGGGATCTTGCAGCCAGATTACTTCAGATGATCCCTGATAATGAGATCTTGTTAGCCAAACTGTGTGCCTTCTACCCTGGCAGCTCAGCTGAAATCAACGACCTTCACGAAAAGTGTGGTCTACCGTCTTTAGAAGAATGTAAAGAGCTTGCTGAGAATGCACATGCTGAGGGAGAAATCTTCCAAGCAGTAAAGTATTACCTCCTGAGCCCAGAACCAGAAAAGGCTCTTCCCATCGGGATCACATATGTCAAAGAGCAGCTGAGCTCTCCTGACTGGGCGGTGGACTCTGTGTACCACATCCTAGACCTGCTGAGCTACATCAGAACAGACCGTCTTATTCTCCCAAAGTGTAGTGAAGACCGCAATGAATTGCTTATTCTCTGTGGTTATATTGGTGCACTATTATCCATTGGGAGGCAGTATTCAAGTATAGTGCCAGCACTGTATGAATACACAAGAGTGGCAGACGACAGCTCATACGCGCCACCATCTGAGGCCCAGAAAACAGAATACAGTCAGCTGTTGAGTCGGATGAGAGACGAGCCCATCAAGGGCCTAGAGGGTCCTGACTATGTCACTGGCTCTAACTTGCCTAGCCACTCTGACGTCCAGATTTCCTGCTTCACTGGCCTCAGGATACAGGGTCCAGCATTCTTCCTGGAAGATGGCAAATCAGCCATTTCACTAAATGATGCCCTGATGTGGGCAAAAGTGAACCCTTTCTCTCCATTAGGGACAGGTATACGCCTCAACCCCTTCTGAGTACAAATACAACAAATGTGAGCAGTATTCTGGCTGGTCTGGCTCTGGAATGACAGCATTTGGAAAGGGGACAACATTCCCGTTTTTTCTCAGAAAGTATATGTCATAAAACAGCAGAATGTCCAATTGTTCAAATCTACATTTTTTGAAGTTTTGCCATTCCATGCTGTGCTTATTACATTCAGGATTGCAGTTTATATGCAAAGAATCACAGTGAAAATGCTGCTGTAGTGAAACACAGGGCCACAAGTAAGACCAACAGCACAAATGCATGTGTGATATTTGTTTTATACAACAGTTCCATAAGCTGAAGTTAATATCAAGTAACGCAAGTTGTTCAGACAGAATTTGCTCAGTTTTGTTCCA

Function

symbol description
wdr17 Acts upstream of or within lens development in camera-type eye. Orthologous to human WDR17 (WD repeat domain 17).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000049_05878283_05898645.mRNA True 4179 mRNA 0.48 28 5878283 5899011

Neighbor

gene id symbol gene type direction distance location
CI01000049_05620218_05631333 NA coding upstream 246950 5620218 ~ 5631333 (+)
CI01000049_05489957_05511003 GALNT7 coding upstream 367280 5486522 ~ 5511003 (+)
CI01000049_05431306_05477613 GALNTL6 coding upstream 400106 5431306 ~ 5478177 (+)
CI01000049_05319353_05347573 GALNTL6 coding upstream 530645 5318886 ~ 5352037 (+)
CI01000049_05273122_05279358 NA coding upstream 598866 5272691 ~ 5279417 (+)
CI01000049_05910501_05913204 SPCS3.L, SPCS3 coding downstream 11490 5910501 ~ 5913261 (+)
CI01000049_06307987_06341121 NA coding downstream 407173 6306184 ~ 6341341 (+)
CI01000049_06385432_06392281 NA coding downstream 485514 6384525 ~ 6392981 (+)
CI01000049_06466105_06468489 NA coding downstream 567094 6466105 ~ 6470789 (+)
CI01000049_06475969_06494373 NA coding downstream 576839 6475850 ~ 6494644 (+)
G208823 NA non-coding upstream 230757 5645811 ~ 5647526 (+)
G208819 NA non-coding upstream 232561 5645297 ~ 5645722 (+)
G208816 NA non-coding upstream 233187 5642188 ~ 5645096 (+)
G208945 NA non-coding upstream 283206 5594358 ~ 5595077 (+)
G208942 NA non-coding upstream 295530 5582469 ~ 5582753 (+)
G208828 NA non-coding downstream 9934 5908945 ~ 5909236 (+)
G209010 NA non-coding downstream 24539 5923550 ~ 5923754 (+)
G209011 NA non-coding downstream 24746 5923757 ~ 5923990 (+)
G208810 NA non-coding downstream 31094 5930105 ~ 5957565 (+)
G209030 NA non-coding downstream 69762 5968773 ~ 5969276 (+)
CI01000049_04473766_04475768 GM10043, LSM6, SNRPF, BRAFLDRAFT_125735 other upstream 1402013 4473662 ~ 4476270 (+)
G208074 NA other upstream 1996072 3877396 ~ 3882211 (+)
G207888 NA other upstream 2253972 3624002 ~ 3624311 (+)
CI01000049_01840330_01843844 FGF8B other upstream 4034455 1839815 ~ 1844077 (+)
G209660 NA other downstream 979122 6878133 ~ 6882030 (+)
CI01000049_07219171_07224229 NA other downstream 1319837 7218811 ~ 7224268 (+)
G210091 NA other downstream 1974739 7873750 ~ 7878856 (+)
CI01000049_08326623_08329601 NA other downstream 2428941 8326285 ~ 8329915 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000447 wdr17 coding NC_007112.7 CM002885.2 38758261 ~ 38803495 (+)