G208819


Basic Information

Item Value
gene id G208819
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 5645297 ~ 5645722 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU236928
AAAACAAATATCCTTATTTAAAATTTAAAGTAAAATAACGAGCTTCCGGCAGACAACTGCGTCAACTTGCGCCAAAGGAGTAACCCCTGACGCGATGTATAACGCAGGATGTAGGAGTATTGTAGGTTTAGACACCTCTCGCGGTTCAAACAAATACGTCTGTACAACAAACTCAAGCTCCTCTTGTCTTATATCAAAATTCTCAGATTTTTCTCTTAAAAATTTCTCGTTTTACACTTCTAATTCATGACCGGTGTTTTGTTTTGCTCTCTCCTCTGCTCCTCCACATTCGTCATTGCATGGGGTCAGAGGTTGCTCTTCCGCCCAAATCGACGTGCGCAGTGTGTTCGGTCATCCGCCGGAAGCTAGTTATTTGAATTTATAAAGTTTTAAATAAGGATATTTGTTTTACACAAATGCATCGAT

Function

NR:

description
PREDICTED: uncharacterized protein LOC106580993

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU236928 True 426 lncRNA 0.40 1 5645297 5645722

Neighbor

gene id symbol gene type direction distance location
CI01000049_05620218_05631333 NA coding upstream 13964 5620218 ~ 5631333 (+)
CI01000049_05489957_05511003 GALNT7 coding upstream 134294 5486522 ~ 5511003 (+)
CI01000049_05431306_05477613 GALNTL6 coding upstream 167120 5431306 ~ 5478177 (+)
CI01000049_05319353_05347573 GALNTL6 coding upstream 297659 5318886 ~ 5352037 (+)
CI01000049_05273122_05279358 NA coding upstream 365880 5272691 ~ 5279417 (+)
CI01000049_05878283_05898645 WDR17 coding downstream 232561 5878283 ~ 5899011 (+)
CI01000049_05910501_05913204 SPCS3.L, SPCS3 coding downstream 264779 5910501 ~ 5913261 (+)
CI01000049_06307987_06341121 NA coding downstream 660462 6306184 ~ 6341341 (+)
CI01000049_06385432_06392281 NA coding downstream 738803 6384525 ~ 6392981 (+)
CI01000049_06466105_06468489 NA coding downstream 820383 6466105 ~ 6470789 (+)
G208816 NA non-coding upstream 201 5642188 ~ 5645096 (+)
G208945 NA non-coding upstream 50220 5594358 ~ 5595077 (+)
G208942 NA non-coding upstream 62544 5582469 ~ 5582753 (+)
G208937 NA non-coding upstream 74973 5570006 ~ 5570324 (+)
G208932 NA non-coding upstream 85766 5559248 ~ 5559531 (+)
G208823 NA non-coding downstream 89 5645811 ~ 5647526 (+)
G208828 NA non-coding downstream 263223 5908945 ~ 5909236 (+)
G209010 NA non-coding downstream 277828 5923550 ~ 5923754 (+)
G209011 NA non-coding downstream 278035 5923757 ~ 5923990 (+)
G208810 NA non-coding downstream 284383 5930105 ~ 5957565 (+)
CI01000049_04473766_04475768 GM10043, LSM6, SNRPF, BRAFLDRAFT_125735 other upstream 1169027 4473662 ~ 4476270 (+)
G208074 NA other upstream 1763086 3877396 ~ 3882211 (+)
G207888 NA other upstream 2020986 3624002 ~ 3624311 (+)
CI01000049_01840330_01843844 FGF8B other upstream 3801469 1839815 ~ 1844077 (+)
G209660 NA other downstream 1232411 6878133 ~ 6882030 (+)
CI01000049_07219171_07224229 NA other downstream 1573126 7218811 ~ 7224268 (+)
G210091 NA other downstream 2228028 7873750 ~ 7878856 (+)
CI01000049_08326623_08329601 NA other downstream 2682230 8326285 ~ 8329915 (+)

Expression


Co-expression Network