Gene
RNA
| Item | Value |
|---|---|
| gene id | CI01000049_05319353_05347573 |
| gene name | GALNTL6 |
| gene type | misc |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000049 |
| NCBI id | null |
| chromosome length | 9665442 |
| location | 5318886 ~ 5352037 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| symbol | description |
|---|---|
| galntl6 | Predicted to enable carbohydrate binding activity and hexosyltransferase activity. Predicted to be involved in protein glycosylation. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Orthologous to human GALNTL6 (polypeptide N-acetylgalactosaminyltransferase like 6). |
| id | description |
|---|---|
| K00710 | GALNT; polypeptide N-acetylgalactosaminyltransferase |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| CI01000049_05319353_05347573.mRNA | False | 1012 | mRNA | 0.43 | 5 | 5318886 | 5347638 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000049_05273122_05279358 | NA | coding | upstream | 39469 | 5272691 ~ 5279417 (+) |
| CI01000049_05089807_05098784 | SPARCL1 | coding | upstream | 219903 | 5089807 ~ 5098983 (+) |
| CI01000049_05040459_05065623 | FAM193A | coding | upstream | 251833 | 5039783 ~ 5067053 (+) |
| CI01000049_04974671_05034415 | DCLK2A, DCLK2 | coding | upstream | 284471 | 4974671 ~ 5034415 (+) |
| CI01000049_04865442_04887290 | NA | coding | upstream | 431507 | 4862971 ~ 4887379 (+) |
| CI01000049_05431306_05477613 | GALNTL6 | coding | downstream | 83668 | 5431306 ~ 5478177 (+) |
| CI01000049_05489957_05511003 | GALNT7 | coding | downstream | 138884 | 5486522 ~ 5511003 (+) |
| CI01000049_05620218_05631333 | NA | coding | downstream | 272580 | 5620218 ~ 5631333 (+) |
| CI01000049_05878283_05898645 | WDR17 | coding | downstream | 530645 | 5878283 ~ 5899011 (+) |
| CI01000049_05910501_05913204 | SPCS3.L, SPCS3 | coding | downstream | 562863 | 5910501 ~ 5913261 (+) |
| G208862 | NA | non-coding | upstream | 134061 | 5184612 ~ 5184825 (+) |
| G208859 | NA | non-coding | upstream | 143880 | 5174790 ~ 5175006 (+) |
| G208858 | NA | non-coding | upstream | 148231 | 5170377 ~ 5170655 (+) |
| G208801 | NA | non-coding | upstream | 230459 | 5088146 ~ 5088427 (+) |
| G208798 | NA | non-coding | upstream | 232526 | 5086127 ~ 5086360 (+) |
| G208802 | NA | non-coding | downstream | 81924 | 5429562 ~ 5515833 (+) |
| G208833 | NA | non-coding | downstream | 178581 | 5526219 ~ 5531252 (+) |
| G208920 | NA | non-coding | downstream | 186417 | 5534055 ~ 5534820 (+) |
| G208922 | NA | non-coding | downstream | 188834 | 5536472 ~ 5537471 (+) |
| G208925 | NA | non-coding | downstream | 195403 | 5543041 ~ 5543276 (+) |
| CI01000049_04473766_04475768 | GM10043, LSM6, SNRPF, BRAFLDRAFT_125735 | other | upstream | 842616 | 4473662 ~ 4476270 (+) |
| G208074 | NA | other | upstream | 1436675 | 3877396 ~ 3882211 (+) |
| G207888 | NA | other | upstream | 1694575 | 3624002 ~ 3624311 (+) |
| CI01000049_01840330_01843844 | FGF8B | other | upstream | 3475058 | 1839815 ~ 1844077 (+) |
| G209660 | NA | other | downstream | 1530495 | 6878133 ~ 6882030 (+) |
| CI01000049_07219171_07224229 | NA | other | downstream | 1871210 | 7218811 ~ 7224268 (+) |
| G210091 | NA | other | downstream | 2526112 | 7873750 ~ 7878856 (+) |
| CI01000049_08326623_08329601 | NA | other | downstream | 2980314 | 8326285 ~ 8329915 (+) |
| CI01000049_04750403_04799247 | ARHGAP10 | coding | upstream | 462019 | 4750403 ~ 4800460 (+) |
