CI01000049_04865442_04887290


Basic Information

Item Value
gene id CI01000049_04865442_04887290
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 4862971 ~ 4887379 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000049_04865442_04887290.mRNA
CAATAAAAACAGGCACAAAGCAGTAGATATGCCATTTCATCTTCGGATTTCACAAAAATCACTCAAAGATACCTCTAAGCAAGTGGTTTGCTCAAAATACTCAAGGATGCAGAAGCCTGATGTTTTGATCATTAATATGACAATTAGGTCATTCCTGTTATGCAATACATTTTGAACACTTGAATATTAAAAACATGAATATGACTATGTTTTGTAATTTAAGAAAGAATTTATATAAAAGTTTATATTTTCCACAGCTGGGTTGCAAAAATGAGGAGAAATGGATTAACAGAACTAAAAAAAAAAAAAAAAAAAAACACTCAGGAGCAACCGAGCACAACATAACAATAACGGACAACTGAACTGAATACAACACAGAGCTTACCCTAGTGAAAAATAAATATACTAAAATGAATTTGAAATGCATTTATTTCATGCTAAGTATACTACTAATATTTTTTGTACGTAATAAAAAATCCTGCAAATGTACTTTAGGTATACTAAACTGATGTACTTAAATTGGACTCATTTTGTACATAATGCACTTCTATTGTGCGGAAGTGGTGCTGAGGTCCACTTTAGCACAATCAAATATACTTAATTGTATATTTAATTGTGCTAAAGTGGAACTATTGCAAGTATACTTTAGGTACACTTTAAATATATCGCATTTAAATAAAGTTCATACAATCCTTATCAGTATTGACATTAAAACACTTTTTAGACTTAATATTAAGAAATGTGCATTATGCACAAGTAGTACTCCAAATAAAGTTTAATTATAATTTTTATATTAGTAAGTCACAAGCGATATATGTAAGCAATAAGGTACGAGAGGCTGTGTTGTATCGTGAATAAGTCACGGTTGAAGGGCGTTGTTAGGCACGACACGAAGCGGAGTGCCTGCAACCCCTTCAGCCGTGACTTATTCACGATACAGCACTAGCCTCGAGTACTATATTGCTTTTATAAAACGGTTACCACACAATACAAATATTAAAGCCAAAAATATGTATCAATGCAACTTTCATGAAGTGAACTTTTACTAAAGCATTCCTTCCGCCGGAAAAATAGTCCCTGACTGTGAACAGCAACAGAAGTTACATTATTAGATGGCGGCAAAGACTGTCTTTATGAGTGTGTCAGTCAGTAGCGAAGACTTTTATATTGAAAAGACTGAATTGTTGTGAACACGGAACAAGACGCAACTGACAAATGCTTTGACAAGCGCTGTCAGTTACAGGAAAACCCCTTAACTGTTAAAAGCACAAGATAATACATTAGACATTTAAACAGATTTTTTATTATGAACATAGGACTGACCTGAAGGAAAATGCTAAATCTGAATGCAGGTAATAAACTTGCTCACTCGATCTCTTTCTAATAATACTCTTCTACATAATACAGTAAGCTTCAATGAACAATATCAATTGAGAACAAACAGTTTACGTTGTTAAGAGTGGTTGCTAAGGGTGTTGTGTAGTGATACAATCGTTTTATCGTGAATAAACACAGCCATTGACCAATCAGAATCAAGGACAGGAACTAACTGTTTTATAACAGTAAATATGTTAATATATTTGAACTACTGTATACTTAGTATGAAACAAATGTATTTTAAATATATTACTTTTTTAGGGTAAATAGACCAAACTGATCAATTAATGTAATTAACATCAAGTGTGACACATAATAAAGCAAGGGAAACAGAAACACAGAAACTGAAATAAATGTGTCCCAAACCCACCCACAAACAGAAACAAAACCAGAAAATCCCTAACAATATGAGACTTTGCTTTGGTCAAAATGAGGCACTTTATTAAATACTATTATTTACACAAATGGAAAATGAACAGGACAGAAGAGCTAAAGTTAGCCATTGGTAAAAGAGGGTTTGAGAGTTAACCTATACATGAGGATTTAACCATATTTTGAAATTATTAGCTCGAAGAATTATACTTGGAATATTTCTTCGAGTTAATGCGAAGTCCCAGGAGACATGATAAAAATAGCAAAATCCACTTAAAACAAAGTTTTAGGTTATGTTCATTTAATTGTGATATAATGATAAGAGATTAATCTAAAACTGTCTATCTTTTAAATTTGTAAAAGTCATATTCAATCCATTACATTTGGAGATATATGGTCGGTAAAAATTAAACTGCACAGTAGGAATGACCCAATTGCATTTGTTCAGCAGAAACTGTAGTTTATGTAAATGTCAGTGCAAGAGACATACTACGGTATGCTTAATAACCAAGTTTCATGGACATAAACAGGAAGCAATTTTTTTTACGATGCTACACCCTTTATAGGTAATTACGTATTGTTCCCTGTGCAATTATACAATCTAAATTCTTTCAAAGGAAGTAATTTTCAACTGAAATGGTAGTGATCACTTACCGGTGTATGGAAATTAGCATATAATAACTCAACATGTTCAGGCCCAACTTGAAAACTACGGGAGTAGAATGGAGTGCAGTTTGGGCATTTGCTATATTATTTGGATTCTGAATATTTATTGCTGCTTACGTGCTGCTGCATCAGCTGAGATCTGCAGAAAGATACTGGCAGGGTTGAGAAAGAAGACTGACAGATGGATCAGGAATGCAAAAATAACAAACCATATAACTGCTCGAATGCACTGCGCTGGAGCTGTCACGGATCAATCTCAACAGAGCGCTAAAGCAGCAGTCTTTCTCCTGGCTCTATGCAGAGCAACGGGCAGAAATAGAACATGCAGCGATAGTTACGCCGAATTTAAACCATTAGAGATGTTCTCTTCAGTTAAGGTGGATGTAAAGTTATCAGACTTCACAGCACACAGACGTACAGATGCTAACCAAAGCCAGGAAGTGAAAGCCTCTTTGCAAGCCAGAGAAAATGAGTCCTGCTCAGCTTCAAGAGGATCACTATTCATTGTGCAAACAGTGACCACTCTTACAGACAGCCACCTCCTCTCCGGTCTAGAGTATTTATGTAACAAAACTTGGAATGCGGCAAAAGCTAAAGCAATGCCACCCAGTCTGACAGGCACTAGGGTCAATGCCACATCCAGTGCCCGCAGCAAACCGACTCCACCTGATGTGTCACACTCTGCGTCACACACTAAGGCACGTATAGGACAGGTAAATGATAAGCTAAATCTACTCAGATGGGTTGGTTTACAAGGCTCTATCATTTTGAAACAGGCTAATAGTCTCTCAGTACCTGTACCTAATAACATTGAGCAAAACTCACATGTGCCGTATGTCAACATGATAGAAAGGGAAAGAGATTGTACTACAATACTAAACATGAAGAGACACAGACCCATTCGACTCATCAATAGCATCATACATATAGATCAGATAATGGTGGCGAAAATTCCATTAACCAGTAATCTAGACAAACACGGCAAGCCCTTTCATGTGATAGGTATCAAATACTCTCAGCAGCCAGTCTTCATAGAGCCAATTTTTACTGTGATTCGTGCTTAGAGTGAGAGGAAATTAAATATGTCTTATTGAAGGCCGAAGGAGTGCAGTTTCTTTCGAAACTCCAGTAAGTTTTTTTTTAGGTCAAGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000049_04865442_04887290.mRNA True 3568 mRNA 0.36 5 4862971 4887379

Neighbor

gene id symbol gene type direction distance location
CI01000049_04750403_04799247 ARHGAP10 coding upstream 62511 4750403 ~ 4800460 (+)
CI01000049_04724881_04735050 TMEM184C coding upstream 127852 4724881 ~ 4735119 (+)
CI01000049_04704214_04715966 EDNRAA coding upstream 146258 4703320 ~ 4716713 (+)
CI01000049_04590737_04592306 POU4F2 coding upstream 269879 4590737 ~ 4593092 (+)
CI01000049_04473766_04475768 GM10043, LSM6, SNRPF, BRAFLDRAFT_125735 coding upstream 386722 4473662 ~ 4476270 (+)
CI01000049_04974671_05034415 DCLK2A, DCLK2 coding downstream 87292 4974671 ~ 5034415 (+)
CI01000049_05040459_05065623 FAM193A coding downstream 152404 5039783 ~ 5067053 (+)
CI01000049_05089807_05098784 SPARCL1 coding downstream 202428 5089807 ~ 5098983 (+)
CI01000049_05273122_05279358 NA coding downstream 385312 5272691 ~ 5279417 (+)
CI01000049_05319353_05347573 GALNTL6 coding downstream 431507 5318886 ~ 5352037 (+)
G208656 NA non-coding upstream 45817 4816643 ~ 4817154 (+)
G208669 NA non-coding upstream 219275 4637027 ~ 4643696 (+)
G208643 NA non-coding upstream 238344 4624402 ~ 4624627 (+)
G208622 NA non-coding upstream 267012 4595093 ~ 4595959 (+)
G208614 NA non-coding upstream 277302 4585452 ~ 4585669 (+)
G208748 NA non-coding downstream 39541 4926920 ~ 4927132 (+)
G208785 NA non-coding downstream 151374 5038753 ~ 5038973 (+)
G208798 NA non-coding downstream 198748 5086127 ~ 5086360 (+)
G208801 NA non-coding downstream 200767 5088146 ~ 5088427 (+)
G208858 NA non-coding downstream 282998 5170377 ~ 5170655 (+)
G208074 NA other upstream 980760 3877396 ~ 3882211 (+)
G207888 NA other upstream 1238660 3624002 ~ 3624311 (+)
CI01000049_01840330_01843844 FGF8B other upstream 3019143 1839815 ~ 1844077 (+)
G209660 NA other downstream 1990754 6878133 ~ 6882030 (+)
CI01000049_07219171_07224229 NA other downstream 2331469 7218811 ~ 7224268 (+)
G210091 NA other downstream 2986371 7873750 ~ 7878856 (+)
CI01000049_08326623_08329601 NA other downstream 3440573 8326285 ~ 8329915 (+)

Expression


Co-expression Network