CI01000049_04590737_04592306 (POU4F2)


Basic Information

Item Value
gene id CI01000049_04590737_04592306
gene name POU4F2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 4590737 ~ 4593092 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000049_04590737_04592306.mRNA
CGCCAGAGACTTGAGACTTCCGCGCAGAGACTGGGCTTGAACTCCAGTCGAAGAAGAAGGCGGAGTCTTAACTTATTAAAAGGAACTCGCCAAGGCTCGGTCGCAAATATGATGATGATGTCTCTGAACAGCAAGCAGGCGTTCGCCATGCCCCACACCAGTTTGGCCGAGGCCAAATACTCCAGCTTGCATTCTTCGTCCTCCTCCTCTACTTTGACTTCCAACGCGCCCTCGTCCTCGTGCTCGTCGTCCAGACACAGCAGCACGATCAGCAGCAGCGGCGGCGGCAGCTCGGAGGCGATGCGCCGAGCATGTCTCCCAACCCCACCGGCTCTGGAGGGCGACCTGCTGGACCACATCACCCCGGGACTGGCACTTGCTGGAGCCATGGCCGGGCCAGACGGCTCGGTGGTCTCCACGCCTGCGCACCCTGCCCACATGGCAGGCATGAACCACATGCACCAAGCTGCCATCAACATGGCTCACGCCCATGGGCTGCCATCCCACATGGGCTGCATGAGCGACGTGGATGCAGATCCCAGGGACTTGGAGGCATTCGCTGAGCGCTTTAAACAGCGTCGGATCAAACTCGGCGTGACCCAAGCGGATGTAGGGTCAGCGCTGGCCAACCTGAAGATTCCTGGCGTAGGCTCTTTAAGCCAGAGTACCATCTGCCGGTTTGAATCCCTCACGTTGTCCCACAACAACATGATCGCCCTGAAGCCCATCCTGCAAGCCTGGCTGGAGGAGGCTGAAAAGTCGCACCGGGAGAAACTGAACAAACCCGAGCTCTTCAACGGGGCCGAGAAGAAGAGGAAGCGGACCTCCATCGCGGCCCCCGAGAAAAGGTCCCTCGAAGCGTATTTTGCTATTCAGCCGCGTCCGTCCTCAGAGAAAATCGCAGCAATCGCAGAGAAGCTGGACCTCAAAAAGAACGTAGTGCGGGTTTGGTTTTGCAACCAGAGGCAGAAACAAAAACGCATGAAATACTCGGCCTGCGTCTAGCTCGAGAAGAACACCAACACGACGTGTCGAGAGACTTCTAAAACTGTTTAGAGACGATTTGTAAAATATTTCTTATCTCACACCTTTTTCAATCATCAATAACTTGTGCATTGAACCAGAATTTCATGACATTCAAAAGAGACATTTGAAAATACCAAATCACTGTCACGTATTACGCAAAGGGGATGTGGAATCATTTAAAGGATCGTTTGACTGATCAAGTAAGACCATTCGTTTTTCCTCACTTATTCTAGCACACTTTCTATATGAGAGGAGCAAGACTCTTTAAGCCTCAATCAGACAGACTGCCTGAAGCTAAATAACATATTTTAGTCATTTACCAGAAAGTGTTCTGTATCAAGCTACACACAACACCAGTAAATTATAAACTGATCAACCCTAAGAGGGAAAAAAAATCTTCAGGTCAAAGGGGTGACAGTGTCTTGTCAGTGTTTTTTTCATTTTAAGTATTTTTTTCTCAGCATGTCACGCTTCAATCTGGTGTTACTTCAGGGTTCATTAGAAGAAGAAGAAAAAAATAAGTCCACGAACGATTCTGCAACATTATTAGATAATAACCAAAACAGCTCTTTGTAAATTATTGATTTAGCTGTTACATGCATAATTTTGTCGTCTGTCGTCTTCTTAATTCCACTTCTGTGATTTTAATAATGATAAACCTAGCCTACAAATAGGCAATGGGCGATGAGAATATCCATATATTTTTACTTGTGAAGGCATATGGATTTAGGACGTATACATTTGCTATAACTGACCACTTAGTTA

Function

symbol description
pou4f2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within brain development and heart development. Predicted to be located in nucleus. Is expressed in eye and rhombomere. Orthologous to human POU4F2 (POU class 4 homeobox 2).

GO:

id name namespace
GO:0048675 axon extension biological_process

KEGG:

id description
K09366 POU4F, BRN3; POU domain transcription factor, class 4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000049_04590737_04592306.mRNA True 1791 mRNA 0.48 2 4590737 4593092

Neighbor

gene id symbol gene type direction distance location
CI01000049_04473766_04475768 GM10043, LSM6, SNRPF, BRAFLDRAFT_125735 coding upstream 114488 4473662 ~ 4476270 (+)
CI01000049_04357318_04365664 NA coding upstream 225067 4357318 ~ 4365670 (+)
CI01000049_04345574_04350571 MMAA coding upstream 239878 4345574 ~ 4350859 (+)
CI01000049_04338384_04339298 NA coding upstream 250870 4338139 ~ 4339867 (+)
CI01000049_04277549_04287107 NA coding upstream 303293 4277549 ~ 4287444 (+)
CI01000049_04704214_04715966 EDNRAA coding downstream 110228 4703320 ~ 4716713 (+)
CI01000049_04724881_04735050 TMEM184C coding downstream 131789 4724881 ~ 4735119 (+)
CI01000049_04750403_04799247 ARHGAP10 coding downstream 157311 4750403 ~ 4800460 (+)
CI01000049_04865442_04887290 NA coding downstream 269879 4862971 ~ 4887379 (+)
CI01000049_04974671_05034415 DCLK2A, DCLK2 coding downstream 381579 4974671 ~ 5034415 (+)
G208614 NA non-coding upstream 5068 4585452 ~ 4585669 (+)
G208613 NA non-coding upstream 5782 4584594 ~ 4584955 (+)
G208612 NA non-coding upstream 8354 4582077 ~ 4582383 (+)
G208609 NA non-coding upstream 11166 4579095 ~ 4579571 (+)
G208536 NA non-coding upstream 69948 4520560 ~ 4520789 (+)
G208622 NA non-coding downstream 2001 4595093 ~ 4595959 (+)
G208643 NA non-coding downstream 31310 4624402 ~ 4624627 (+)
G208669 NA non-coding downstream 43935 4637027 ~ 4643696 (+)
G208656 NA non-coding downstream 223551 4816643 ~ 4817154 (+)
G208748 NA non-coding downstream 333828 4926920 ~ 4927132 (+)
G208074 NA other upstream 708526 3877396 ~ 3882211 (+)
G207888 NA other upstream 966426 3624002 ~ 3624311 (+)
CI01000049_01840330_01843844 FGF8B other upstream 2746909 1839815 ~ 1844077 (+)
G209660 NA other downstream 2285041 6878133 ~ 6882030 (+)
CI01000049_07219171_07224229 NA other downstream 2625756 7218811 ~ 7224268 (+)
G210091 NA other downstream 3280658 7873750 ~ 7878856 (+)
CI01000049_08326623_08329601 NA other downstream 3734860 8326285 ~ 8329915 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location