G208622


Basic Information

Item Value
gene id G208622
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 4595093 ~ 4595959 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU236700
TTATAATTTGGTGGTTAATTTTAAGAAGCTCTCTGACTGAATAGACCCAAAAGTTCTCATCAATTCTAACCTGCTTCAAACGAGGAAATCAGTTTTCCTAAACGAGCTGATCACTTAACACGATAATGTGAACGAATTATTAAATTACACATCGAATTATGAAAATCAGATAATTACTAGCACTAAGTAAGTAATCATTAACTGGAGCTGTTAATTACAGTCGGTCATGGAGGGCTGTACGTGGAGAGGCTCGTCGGGAATGGAAATGAATCTAGTTGCTTGACACTTATGGACTAAACGGCCTATCCCGAGCGAGCTACTCTTTAACTTTCAGATAGGTGCGAAAAATATCGATCGGATTTTTTTTTTTTTTTTTTTTAACCAAATCAGTGAAGGGAAAACAGAGAGGTAGACTAAAATATAGGATCATTCAATACACACACGGGTGCGCTTAAATGTATATTTCCAAGAAAATTGAATGTGTCATTTTATTCTGCCTTCCTTTAATAGACTGATCCAAGAGGGGGCACTGACCTGTTAGCGGTATCGCGTACATGTGATTCTCATGCTTTAAAAACCATGGTGGTCACACTCAAAAACGAAAGGGCAGTGCTGTTTTCCTTTGTTATAATTAGGTCTTCTGTTTTCTTTCTCTTTCCCCTGAACATTTCCCCCCTTTCATAGGGATAGTGATGAAATTTTAATGAAGCCAGGGACTGTCGGTGCTCCGCCTGGGGACCTACGAATAGAATATTTTAACTGTACATTTACCCCAAGTGTCTGCCATCAAAGCACGTTAAGACAAACCACAGGCCTCTGACGTGTTGGAGCCCCTTATTTAGCACTTGAACATTTATTGTATTGTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU236700 True 867 lncRNA 0.39 1 4595093 4595959

Neighbor

gene id symbol gene type direction distance location
CI01000049_04590737_04592306 POU4F2 coding upstream 2001 4590737 ~ 4593092 (+)
CI01000049_04473766_04475768 GM10043, LSM6, SNRPF, BRAFLDRAFT_125735 coding upstream 118844 4473662 ~ 4476270 (+)
CI01000049_04357318_04365664 NA coding upstream 229423 4357318 ~ 4365670 (+)
CI01000049_04345574_04350571 MMAA coding upstream 244234 4345574 ~ 4350859 (+)
CI01000049_04338384_04339298 NA coding upstream 255226 4338139 ~ 4339867 (+)
CI01000049_04704214_04715966 EDNRAA coding downstream 107361 4703320 ~ 4716713 (+)
CI01000049_04724881_04735050 TMEM184C coding downstream 128922 4724881 ~ 4735119 (+)
CI01000049_04750403_04799247 ARHGAP10 coding downstream 154444 4750403 ~ 4800460 (+)
CI01000049_04865442_04887290 NA coding downstream 267012 4862971 ~ 4887379 (+)
CI01000049_04974671_05034415 DCLK2A, DCLK2 coding downstream 378712 4974671 ~ 5034415 (+)
G208614 NA non-coding upstream 9424 4585452 ~ 4585669 (+)
G208613 NA non-coding upstream 10138 4584594 ~ 4584955 (+)
G208612 NA non-coding upstream 12710 4582077 ~ 4582383 (+)
G208609 NA non-coding upstream 15522 4579095 ~ 4579571 (+)
G208536 NA non-coding upstream 74304 4520560 ~ 4520789 (+)
G208643 NA non-coding downstream 28443 4624402 ~ 4624627 (+)
G208669 NA non-coding downstream 41068 4637027 ~ 4643696 (+)
G208656 NA non-coding downstream 220684 4816643 ~ 4817154 (+)
G208748 NA non-coding downstream 330961 4926920 ~ 4927132 (+)
G208785 NA non-coding downstream 442794 5038753 ~ 5038973 (+)
G208074 NA other upstream 712882 3877396 ~ 3882211 (+)
G207888 NA other upstream 970782 3624002 ~ 3624311 (+)
CI01000049_01840330_01843844 FGF8B other upstream 2751265 1839815 ~ 1844077 (+)
G209660 NA other downstream 2282174 6878133 ~ 6882030 (+)
CI01000049_07219171_07224229 NA other downstream 2622889 7218811 ~ 7224268 (+)
G210091 NA other downstream 3277791 7873750 ~ 7878856 (+)
CI01000049_08326623_08329601 NA other downstream 3731993 8326285 ~ 8329915 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G918931 NA non-coding NC_048574.1 CM023228.2 67786237 ~ 67786445 (-)