G208110


Basic Information

Item Value
gene id G208110
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 4148581 ~ 4151769 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU236140
CCCTCTATAAAATAGTGGATTACTCAGTAAATATACATCTGTGACATTTAATATTTTGGCTCTCATCACTATTTGTCTTTGTACAGAAAAAAAAAAGCAAAAATTTGAGTCGGGGAAGTTTCCGAAATTTGGTTGATTTGTCTCAGAATGACCCTGTTGAAGGAAGTTGAAGGATCTTGTATATTGCAAGAGCTTAAGCAATTTGACGTTCATGGAGTTTGTATGAAGGGAGTCCATTTAAGAAACTGGATGTACGGTCCTAAATTTGACAGTGCCACTTTTTTTTTTTAATTGCTGTTTTGTCATAGGTGTAAAATGCAGTCTTTCATGAGAAGAGAGTCTAATAGATCTATACTCTGTCTTGTCTTAGAAGTCCATCCAGTGGAGCTCTCTGTTATTGCAACTAGTTGAACAAATTCTTGATCTTGTTCAGCTTTCCAGTCAGTGGTTTTACTAAAGGAACTTTGGGGATCATGGACAAAATCATTTTTGCTGTACAGTTTAGTACAGCAGATATAGTTTTCAGGATTCTTTGAATAGAAAGTTTATTTGAAAATTGTATTCATCCTTGCTGAATAAAACTATTAATTTCTTTTTTAAAAATGACTGATCCCAAACTTTAGAATGATAGAATTTTATATAATTTCATTCTATTTATTTATTTATGTATTTATTTAATAACAACGATTCACTTCTGCAGTGTACTTGGGTTCAAAAACATGGCAGCTTGTTTCAACATACTAATTTCCTTGTTTTTCCTTATAAAATCATAATGTATGAACATTTGTGTTGAAATTCATTTAAGCTATAATGCATCTCTCAGGATGAAGTGGTTACCAGACAGCATTTGACAGAAATCAGCTGCCTGTCTCATACCTTTCCCTCCCTCTGGCTTTTCAGTTTCCTTCGCAGGGCCAGGGTCCTTTAACGGCTCGGTGGACTCGGCAGGAGTAAACGTTTGTATATCTTTGGGAACAGTGTATAACGCACGGTCAGTGTAGTTAGAGAAATCCCTGTGGTGATGGAGAGTTAGGAATATCTGGTACCTTTTTCTGATGTGGTGTCAAACACCTCTGCATCCACTGTGCTGAGTGGGATATGAGCATCTTCCTGTTTGGGATGCAAGTCCACGGAGTACCTCTGCATTAGACAAACATGATCAGTATGTAGTTTGTATATCCAGTGTAATAATTATAAAATATCAAATGCACAGGGAGCCATAAATTAAGGCTATTAAATGTTATTATTGGTTTTCAAATGTCCCCCAATTAATTTACAAAACAAAAAAAAAAATCTCTTACCCTGGACTTCTTTTGAAGGCAACAATAAACTACTACCCCACTTATGCACACGACAACAATAATCAGGATAATTATGTAAGTTATTCCGTTGCTTTTTCCCTTTGTTTGTGTGTGTATATGAGGTGTGGTTATTTTGCTGGCTGTGCTTTTAATCGTACTTGCGCTGGATTTTGGAACATTCTTCCCAGGATCATCTGTGGTGACATTGTTGGTCTGTGGATGATTTGTGCTGGATTTTGGAACATTCTCCTGAGAATCGTCTGTGGTGTCATTGTTGGTCTGTGGATAATCTGAAGTAGGCGAATCTGACATATTCTCATCCGTAGTGCTTATCAGGGTGTCAGTGGAGTTTGGAGGGAATGAAGTGGGGAGGTTGTCCGGAAAGTCTGCTGATGTTTGATTTAATATGGTGGTGTGGTCATTAGACATTGAAACTACAGCAGTGGTGGTTTCTTCGCTGTATGTCATTGTTGTTAACTCATTTTTAACAGCAAGGACAAGCAAGGCACCAATGAGGAGATGAAGTGATGTGGAGCACATCTTGAAAGGTGATAGCATCTAGTCAAATGAGTGTTCCTTCCTCAGGACAGCAAGTGCTCAGTCTGAAACCACGTAACTTCCACTTCTATGACCAGCACAGGATGCAGCAGACTATTGCCTAAAAAAGGCACATAAGGAACTTATGCACTTTTGTAAAGCCCCATTTGCTACATTTGTATTATTCATTTAATTAAAATATACAGGTTTTCTGTGCTTTTTAAGCGTTGATATTATGATCTATTGTTTGCAGCAAGGCTAAAAAGGGAAATACTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU236140 True 2115 lncRNA 0.37 6 4148581 4151769

Neighbor

gene id symbol gene type direction distance location
CI01000049_04064603_04090446 GAB1 coding upstream 58135 4064603 ~ 4090446 (+)
CI01000049_04000506_04009508 USP38 coding upstream 138855 4000101 ~ 4009726 (+)
CI01000049_03972425_03973129 NA coding upstream 174734 3972246 ~ 3973847 (+)
CI01000049_03961350_03962120 NA coding upstream 185632 3961279 ~ 3962949 (+)
CI01000049_03951470_03952048 NA coding upstream 196408 3951322 ~ 3952173 (+)
CI01000049_04219938_04257323 HHIP coding downstream 68169 4219938 ~ 4257323 (+)
CI01000049_04277549_04287107 NA coding downstream 125780 4277549 ~ 4287444 (+)
CI01000049_04338384_04339298 NA coding downstream 186370 4338139 ~ 4339867 (+)
CI01000049_04345574_04350571 MMAA coding downstream 193805 4345574 ~ 4350859 (+)
CI01000049_04357318_04365664 NA coding downstream 205549 4357318 ~ 4365670 (+)
G208098 NA non-coding upstream 208277 3940060 ~ 3940304 (+)
G208096 NA non-coding upstream 214955 3933272 ~ 3933626 (+)
G208095 NA non-coding upstream 215992 3932364 ~ 3932589 (+)
G208090 NA non-coding upstream 225702 3922426 ~ 3922879 (+)
G208071 NA non-coding upstream 247108 3899709 ~ 3901473 (+)
G208130 NA non-coding downstream 15315 4167084 ~ 4167339 (+)
G208144 NA non-coding downstream 55600 4207369 ~ 4207846 (+)
G208173 NA non-coding downstream 166623 4318392 ~ 4318643 (+)
G208176 NA non-coding downstream 225487 4377256 ~ 4381607 (+)
G208240 NA non-coding downstream 325016 4476785 ~ 4477491 (+)
G208074 NA other upstream 266370 3877396 ~ 3882211 (+)
G207888 NA other upstream 524270 3624002 ~ 3624311 (+)
CI01000049_01840330_01843844 FGF8B other upstream 2304753 1839815 ~ 1844077 (+)
CI01000049_04473766_04475768 GM10043, LSM6, SNRPF, BRAFLDRAFT_125735 other downstream 321756 4473662 ~ 4476270 (+)
G209660 NA other downstream 2726364 6878133 ~ 6882030 (+)
CI01000049_07219171_07224229 NA other downstream 3067079 7218811 ~ 7224268 (+)
G210091 NA other downstream 3721981 7873750 ~ 7878856 (+)
CI01000049_08326623_08329601 NA other downstream 4176183 8326285 ~ 8329915 (+)

Expression


Co-expression Network