CI01000049_03951470_03952048


Basic Information

Item Value
gene id CI01000049_03951470_03952048
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 3951322 ~ 3952173 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000049_03951470_03952048.mRNA
GGATAAAAAATGCGCCCAACCATCCTTAAACTCCAAACCAGCACACAACAGAGCAAAGATGAAGTTATTTCTTACTATACTTTTTCTGTTTGTCCTTTACAGACAAACAACAGGTATAAATAGAATGCACATTTATGTGACCACTCCTATGACCTGCACTGAAGCTCGAAAGTATTGTCAAACATATCACACAGACCTGTCTACAATCAACGGTGAGGTGGACATCCAGATGGTACAAAATGCAGCTGGAGGAGCTTATAACCAGAGTTGGTTCAGTTCACTGATTCAGAAAACTGAAAACTCATGCACATTAATGAACTATGAGGAATCAAGAATAACACTTCTTTGGACTGCATTGTGTGGGTTTCCTAATTGGTTGTGTACAAGTACCCATCCGTTTTTCTGCTCTAAGAACTTGATTTTGGTGCAGGAGAAAAAGACATGGGAGGAAGCTCTAGAGTACTGCCGGTCCCACTATGTTGATCTGGCCTACTTGGATTCTAAGGTGATACCAGATCTGAGTAATGCCCAGACAGAGAGTGTGTGGACAGGCATGCGTTTCCTAGCTGGAAAATGGTTCTGGGTGAGCAAGAAGAATATTTTTGAGACCAACATCACTCTGCCCTCATGCCCACACGAGCCGTACCGTTGTGGAGCCTGCAACACCCAGAAAGAGCAATTGGAGAACAGAGACTGTGAGGAGAGGCTCAACTTTCTTTGTTTTTAAAGATACAGGCAAGTGATAAAGCATCATGTGAGAACTGTTTTCAGTTCATTTGCAGATATGTTTGACAATGAATGCATGCTGACAAATCAGAAACATAAAAGCACTTAAAAGTGTGTATTTATAAA

Function

NR:

description
novel protein similar to lectins, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000049_03951470_03952048.mRNA True 852 mRNA 0.41 1 3951322 3952173

Neighbor

gene id symbol gene type direction distance location
CI01000049_03893675_03894085 NA coding upstream 56153 3892179 ~ 3895169 (+)
CI01000049_03872066_03885573 NA coding upstream 65082 3872066 ~ 3886240 (+)
CI01000049_03852103_03860363 GTF2F2A coding upstream 90548 3852103 ~ 3860774 (+)
CI01000049_03844455_03850424 GPALPP1 coding upstream 100892 3844455 ~ 3850430 (+)
CI01000049_03843068_03843461 NA coding upstream 107777 3842852 ~ 3843545 (+)
CI01000049_03961350_03962120 NA coding downstream 9106 3961279 ~ 3962949 (+)
CI01000049_03972425_03973129 NA coding downstream 20073 3972246 ~ 3973847 (+)
CI01000049_04000506_04009508 USP38 coding downstream 47928 4000101 ~ 4009726 (+)
CI01000049_04064603_04090446 GAB1 coding downstream 112430 4064603 ~ 4090446 (+)
CI01000049_04219938_04257323 HHIP coding downstream 267765 4219938 ~ 4257323 (+)
G208098 NA non-coding upstream 11018 3940060 ~ 3940304 (+)
G208096 NA non-coding upstream 17696 3933272 ~ 3933626 (+)
G208095 NA non-coding upstream 18733 3932364 ~ 3932589 (+)
G208090 NA non-coding upstream 28443 3922426 ~ 3922879 (+)
G208071 NA non-coding upstream 49849 3899709 ~ 3901473 (+)
G208110 NA non-coding downstream 196408 4148581 ~ 4151769 (+)
G208130 NA non-coding downstream 214911 4167084 ~ 4167339 (+)
G208144 NA non-coding downstream 255196 4207369 ~ 4207846 (+)
G208173 NA non-coding downstream 366219 4318392 ~ 4318643 (+)
G208176 NA non-coding downstream 425083 4377256 ~ 4381607 (+)
G208074 NA other upstream 69111 3877396 ~ 3882211 (+)
G207888 NA other upstream 327011 3624002 ~ 3624311 (+)
CI01000049_01840330_01843844 FGF8B other upstream 2107494 1839815 ~ 1844077 (+)
CI01000049_04473766_04475768 GM10043, LSM6, SNRPF, BRAFLDRAFT_125735 other downstream 521352 4473662 ~ 4476270 (+)
G209660 NA other downstream 2925960 6878133 ~ 6882030 (+)
CI01000049_07219171_07224229 NA other downstream 3266675 7218811 ~ 7224268 (+)
G210091 NA other downstream 3921577 7873750 ~ 7878856 (+)
CI01000049_08326623_08329601 NA other downstream 4375779 8326285 ~ 8329915 (+)

Expression


Co-expression Network