CI01000049_03872066_03885573


Basic Information

Item Value
gene id CI01000049_03872066_03885573
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 3872066 ~ 3886240 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000049_03872066_03885573.mRNA
AGTCTGCTTTAATGCACATGGCTAATACAGACAGTATTCTAGAAATCTGTTTGGTAAAACACTCTTTGTCTTTCTTGAATGTTTGTTTGGCCCATTACTTCACAGTTAAAATGATCTTCCTGCAGGCGATGGCAGGGCTTCCCTTCATGCTGGCCTGCAATATTACCATGGAGACAGGGGAGGCTTTAAAACAAGTACATTGGTTGGACATGACAAATAAAACTATACTTCATTATCAGCCTGATAAGTATGAGCACGTCACCAAAGTGGATGGAATAGAGCTTTCACAGCAAATAGAAGGTCAGCAAGCTCACACCAGTGTCATCACCATCAAAAGAGCCGGGCCAGCCAACGAAGGCTGCTACCAGTGTCTTTTTGATGTGTACCCAAGCGGCCAGCAGAGAGGAAGGACATGTCTTTCACTTACGGCAAAGGTGGAACTGATGGACAATAAAACAGTTGTGAGTGGAAAGCCTGTTACATTTTTGTGCAAGTACATTCTCAGTAAGCGAGTCCGGCAGGTTTTATGGAAAAAAACAGCTGAGCAAGGGGACACTGCCACTGTTGCTTCTTATGTCAACAATGACAGTCCCAGCGTTGACACCGCTTTCAAAGGTCGGGTAACTCTAAATCCATCACTTGGGCAATCTAAGCTCTCCATACACCAGGCTCAGACAGAGGATGAGGGGTGCTACACCTGCGAGTTCCACACGTATCCAGATGGCATTAAGAGTGCAACAGCTTGCTTGTCTGTTTATGAACAGAGCTCCACTGTGTTTGCTTTCTCTCTGTTGATATTCCCCAAACAGTCTGGCTGTTGTCACCAAAAAGCTCACACAGCCACAAAAGTGGACAGAGCCTCACTTTCCCCTTGTCTTGTCATGGTTTGTCTCTTTCTCTTTTATCTGACTTATGTCACAGAGTCCCTCTTTGATGGAGTCTGCCGCAGACATGACCAACGTCTGACGGCTTGTAATCAGCAAAACAACACAAGTGCCTTCTTTTGTCTTCTGAATGAAGCTACCACTTACAATACAACAAAGAAGTTCAACAAGACCAATACAGTATTTGTACTGGACATATACAAAGTTCACATATTTGGCACACTTCAGTCTGTTGGCATTGTTGAGGCGAACTGCTCAGCCTTGTCACGTCCTGCAGCAGAGATCTCTTGGAACGTGGAGGGGCATAATCAAACGCTGGGCCCTGCCGTGACATCATTTTACCAGCTAGGGGACGGCACCACAATGGTGGTCAGTACCATTCAACTGCAGACTGAACTACTGGATGATGAACTTGTGAAGTGTGAAGTTCGTCATCAAGGCCTTGTATCTGCCATCTATGTGACTCTGAATAAACCTAGGAACGCTCATGTCATTCTCATTTCAGCCAGCTGTGTGGCCCTTGTGCTGCTCATATGTCTGTGCATCTGCCTGAAGAGGTGCTAACTTTACCTGCTGATATGGTCAGTATAGCAACACAAAAATGTCTGTCCTCTTTAATATTATGTTTCACATCAATTTAAAGTCACAGGGAAATCAAAATTGATATTTCTTATTTTTATGGAATATTGCAGTGTTTATTATAAATGATTTATCCATCATTATTTTTTTTAAAAATGATGTTCCTTCATAATCTTTAATCAATATAATTTCCCCTCCCTCTTGCAATGACACTCTTCTCTTCTCTGATGATGTGTTTGACATGAGGGCGGGATAAACTGTCACTCATATGAGATCACAGCAATAGCAAACCACAACAATCCAATCAATTCTCAATGGACAAAATCAAGTCCCATCTTACAATTTCACTTAATTATTACTCACAATATAAGGAAAGAAATTACTTTCACAACTTCTGTTTCATGCCGACTTTAATGTTTTTTAATCCCAGGGGATTTAATATGCTTAGAATATAAGGGTGAACACATGTAAGAATGCAGAAATTTGCATGCAAGAATAATCACAGAAAGAAGATATCCTGTGTTTACTTTGGATCAGTCTGTAAATGTTTTGTTTTTAAAACTTGGCTTTTGACACCAACGTTTTTTCGACATGGGGTGAAACGACAACTTAAGAAGAAATGTAGCTTTGGAATTTTATGATCATAGGCACA

Function

GO:

id name namespace
GO:0008037 cell recognition biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000049_03872066_03885573.mRNA True 2115 mRNA 0.41 6 3872066 3886240

Neighbor

gene id symbol gene type direction distance location
CI01000049_03852103_03860363 GTF2F2A coding upstream 11292 3852103 ~ 3860774 (+)
CI01000049_03844455_03850424 GPALPP1 coding upstream 21636 3844455 ~ 3850430 (+)
CI01000049_03843068_03843461 NA coding upstream 28521 3842852 ~ 3843545 (+)
CI01000049_03756695_03758838 KLF12 coding upstream 112771 3756423 ~ 3759295 (+)
CI01000049_03631096_03632219 KCTD12.2 coding upstream 239696 3629377 ~ 3632370 (+)
CI01000049_03893675_03894085 NA coding downstream 5939 3892179 ~ 3895169 (+)
CI01000049_03951470_03952048 NA coding downstream 65082 3951322 ~ 3952173 (+)
CI01000049_03961350_03962120 NA coding downstream 75039 3961279 ~ 3962949 (+)
CI01000049_03972425_03973129 NA coding downstream 86006 3972246 ~ 3973847 (+)
CI01000049_04000506_04009508 USP38 coding downstream 113861 4000101 ~ 4009726 (+)
G207995 NA non-coding upstream 5523 3660881 ~ 3866543 (+)
G208019 NA non-coding upstream 160132 3710751 ~ 3711934 (+)
G207989 NA non-coding upstream 230513 3641252 ~ 3641553 (+)
G207889 NA non-coding upstream 243892 3627949 ~ 3628174 (+)
G207876 NA non-coding upstream 280229 3591457 ~ 3591837 (+)
G208071 NA non-coding downstream 13469 3899709 ~ 3901473 (+)
G208090 NA non-coding downstream 36186 3922426 ~ 3922879 (+)
G208095 NA non-coding downstream 46124 3932364 ~ 3932589 (+)
G208096 NA non-coding downstream 47032 3933272 ~ 3933626 (+)
G208098 NA non-coding downstream 53820 3940060 ~ 3940304 (+)
G207888 NA other upstream 247755 3624002 ~ 3624311 (+)
CI01000049_01840330_01843844 FGF8B other upstream 2028238 1839815 ~ 1844077 (+)
CI01000049_04473766_04475768 GM10043, LSM6, SNRPF, BRAFLDRAFT_125735 other downstream 587285 4473662 ~ 4476270 (+)
G209660 NA other downstream 2991893 6878133 ~ 6882030 (+)
CI01000049_07219171_07224229 NA other downstream 3332608 7218811 ~ 7224268 (+)
G210091 NA other downstream 3987510 7873750 ~ 7878856 (+)
CI01000049_08326623_08329601 NA other downstream 4441712 8326285 ~ 8329915 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000416 sc:d189 coding NC_007112.7 CM002885.2 35194454 ~ 35234700 (+)