CI01000051_06015846_06019716 (RD3)


Basic Information

Item Value
gene id CI01000051_06015846_06019716
gene name RD3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 6015707 ~ 6019716 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000051_06015846_06019716.mRNA
ATGTCGTGGTTCAGCTGGAATGAGCCGTACTATCGGAGCCCACGACGTGAGCCTTCTGAAGTGGTTATGGAAACCCTGATGCTGGAACTGAGCTGGCAGATGAAGGAGGCCGAGAGGCTGCAGCGGGAGCGAGACAATGAATATCGAAGGCTGAAGAGCGGCGTGGACTACAGCTGGCTCATGAGCGCCCCGCGCAGCTCATATGATATCAGCCAAGGAGAGAGACTGGGCCTTGAGGACCTGTGTAGCAAAGTACCACCATCATACTGTGGACCTACAATACAAAGGTTTCGGCAGGTGCTGATGGAGAATGAACCAGAGGTGCAGGAGGTTTCCGGACTCTTCCGTTCTGTGCTTGTGGAAACACTTGAGCGTGTTCATGAGGAGCAGGAGGCTCAGCGTCTGACCCACCAGTGGAACAACAGACGCTCCATAAGCTTGTCGCTGATGAGCTTCAAGTCTCGAGTGCGGATCAACCCTTTCAGCAGCACCTTGGGATTGAAATCAGACAGTTACGGCTCAGAGGAAGATGGCATAGATGTCAAGACTGTGAGTGGGGATGTTGAGAAGGGCCTTGGCCAGACAGCGGAGAAAGCGCAGCGCGTGTGGAGCATGCCAGAGTTCCGACACAAGGGAATCAATGGTAAAGCTTGAGTGTCTTTGGGTGGGATTCAGCAGGAGCTGGTCCAGTCAATGACTGTCAGATATTCCCAGCATCACCTTCACTTTCAGTGTATTTATATTTTGAGATGTAAGCGTGGAGGCAAGAGGTATGTTCATGTTGGGAAATAAA

Function

symbol description
rd3 Human ortholog(s) of this gene implicated in Leber congenital amaurosis; Leber congenital amaurosis 12; and retinal degeneration. Orthologous to human RD3 (RD3 regulator of GUCY2D).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000051_06015846_06019716.mRNA True 793 mRNA 0.52 2 6015707 6019716

Neighbor

gene id symbol gene type direction distance location
CI01000051_05949486_05950751 KCNS3B coding downstream 64854 5949343 ~ 5950853 (-)
CI01000051_05752434_05755144 NA coding downstream 260563 5752290 ~ 5755144 (-)
CI01000051_05743847_05749675 BPNT1 coding downstream 266032 5743671 ~ 5749675 (-)
CI01000051_05690134_05690418 NA coding downstream 325289 5689547 ~ 5690418 (-)
CI01000051_05679116_05685755 KCNK5B coding downstream 329751 5678771 ~ 5685956 (-)
CI01000051_06033224_06041180 SLC30A1A coding upstream 13326 6033042 ~ 6041180 (-)
CI01000051_06041891_06047349 NEK2 coding upstream 21903 6041619 ~ 6047710 (-)
CI01000051_06052696_06090422 LPGAT1 coding upstream 31337 6051053 ~ 6090422 (-)
CI01000051_06175507_06185039 NA coding upstream 155763 6175479 ~ 6185039 (-)
CI01000051_06189714_06192740 NA coding upstream 169896 6189612 ~ 6192740 (-)
G221825 NA non-coding downstream 28575 5984363 ~ 5987132 (-)
G221822 NA non-coding downstream 36711 5978741 ~ 5978996 (-)
G221804 NA non-coding downstream 67051 5948420 ~ 5948656 (-)
G221780 NA non-coding downstream 105959 5855672 ~ 5909748 (-)
G221745 NA non-coding downstream 247115 5768371 ~ 5768592 (-)
G221836 NA non-coding upstream 80843 6100559 ~ 6100763 (-)
G221837 NA non-coding upstream 82006 6101722 ~ 6102002 (-)
G221858 NA non-coding upstream 174944 6194660 ~ 6194895 (-)
G221890 NA non-coding upstream 377065 6396781 ~ 6396987 (-)
G222054 NA non-coding upstream 643892 6663608 ~ 6689905 (-)
G221575 NA other downstream 496883 5513952 ~ 5518824 (-)
G220041 NA other downstream 1857604 4155730 ~ 4158103 (-)
CI01000051_02955633_02960400 SCRN2 other downstream 3054213 2955380 ~ 2961148 (-)
G218861 NA other downstream 3175075 2840270 ~ 2840632 (-)
G218728 NA other downstream 3469248 2527343 ~ 2546459 (-)
G221840 NA other upstream 113057 6132773 ~ 6133579 (-)
G222729 NA other upstream 2322433 8342149 ~ 8342652 (-)
G222730 NA other upstream 2323254 8342970 ~ 8343438 (-)

Expression


Co-expression Network