G222054


Basic Information

Item Value
gene id G222054
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 6663608 ~ 6689905 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU251841
ACCGGATGCTGAACGGAGTTGGACATAGTGGTGTTTTAGAGGTTGTTCAGAAGGATGAAGCTAAAACAGATCCTGAGAGGTGTACAGTGGCAGTGTTTGTCATCAAGGAAGATGAGGATCCTCTCCAGCCACCACATCACATTGGGATTGTTTTTTTGCCCTCAAGTGTTGATGTGTGAAATGCGTACCGGCTAGCCTAACTGGTAGCAAAATTCATTTGAGACTTTTATTTATTTTTGTTTTTGTTTTGTTTTTTGACAACAGAGAAGGTGATGTATATTTTAAAAAGACAATGACATCACAATAAACATTAAGGCC
>TU251842
GTTCTGAGTTTCTGACCTTACGAGGGAAGAACAACAGCACGACCAAGGTGATACTCTTGCGAATAAACCTTTCACCGCACGGACCTTCAAGCAGCCCAACTGCTTCTGCAGAGGACTTTGGCTCCTGACCTGCATAACTCAAGTACCTCCAACCTACAGAAGATCCTGCGGACCGAACACCATCTGACATACAGTTCTCTGGATTACACAAAGACCTCCAGCACTCAGTGCGCTCTGCAACTGTTGGAAAGCAATCCAGTCTCCCACTGCACACGGAAGGATACCAGTGGACAACGTTTCCCATTCCCGGACTGATCACCTGACCAAGTGAAACGTTGTTCAGAAGGATGAAGCTAAAACAGATCCTGAGAGGTGTACAGTGGCAGTGTTTGTCATCAAGGAAGATGAGGATCCTCTCCAGCCACCACATCACATTGGGATTGTTTTTTTGCCCTCAAGTGTTGATGTGTGAAATGCGTACCGGCTAGCCTAACTGGTAGCAAAATTCATTTGAGACTTTTATTTATTTTTGTTTTTGTTTTGTTTTTTGACAACAGAGAAGGTGATGTATATTTTAAAAAGACAATGACATCACAATAAACATTAAGGCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU251841 False 318 lncRNA 0.39 2 6663608 6672624
TU251842 True 611 lncRNA 0.45 2 6663608 6689905

Neighbor

gene id symbol gene type direction distance location
CI01000051_06423541_06426013 NA coding downstream 235995 6422096 ~ 6427613 (-)
CI01000051_06366293_06372185 DTL coding downstream 291423 6366118 ~ 6372185 (-)
CI01000051_06332084_06361639 PPP2R5A coding downstream 301761 6331867 ~ 6361847 (-)
CI01000051_06201120_06284027 ENPP1 coding downstream 378824 6200459 ~ 6284784 (-)
CI01000051_06189714_06192740 NA coding downstream 470868 6189612 ~ 6192740 (-)
CI01000051_06739181_06742303 PLVAP, VSG1 coding upstream 48884 6738639 ~ 6742303 (-)
CI01000051_06803307_06824913 GNPAT coding upstream 113402 6803307 ~ 6824913 (-)
CI01000051_06837978_06881158 TRIM67 coding upstream 147509 6837414 ~ 6881706 (-)
CI01000051_06884323_06886377 EXOC8 coding upstream 194103 6884008 ~ 6886639 (-)
CI01000051_06910132_06916487 NA coding upstream 219535 6909440 ~ 6916487 (-)
G221890 NA non-coding downstream 266621 6396781 ~ 6396987 (-)
G221858 NA non-coding downstream 468713 6194660 ~ 6194895 (-)
G221837 NA non-coding downstream 561606 6101722 ~ 6102002 (-)
G221836 NA non-coding downstream 562845 6100559 ~ 6100763 (-)
G221830 NA non-coding downstream 645638 6017633 ~ 6017970 (-)
G222137 NA non-coding upstream 73285 6763190 ~ 6763420 (-)
G222173 NA non-coding upstream 283177 6973082 ~ 6994996 (-)
G222190 NA non-coding upstream 321128 7011033 ~ 7011313 (-)
G222194 NA non-coding upstream 324200 7014105 ~ 7014311 (-)
G221840 NA other downstream 530029 6132773 ~ 6133579 (-)
G221575 NA other downstream 1144784 5513952 ~ 5518824 (-)
G220041 NA other downstream 2505505 4155730 ~ 4158103 (-)
CI01000051_02955633_02960400 SCRN2 other downstream 3702114 2955380 ~ 2961148 (-)
G218861 NA other downstream 3822976 2840270 ~ 2840632 (-)
G222729 NA other upstream 1652244 8342149 ~ 8342652 (-)
G222730 NA other upstream 1653065 8342970 ~ 8343438 (-)

Expression


Co-expression Network