CI01000051_06739181_06742303 (PLVAP, VSG1)


Basic Information

Item Value
gene id CI01000051_06739181_06742303
gene name PLVAP, VSG1
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 6738639 ~ 6742303 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000051_06739181_06742303.mRNA
ATGCCAGTATACAGATGGTATAATGTGACGTGGGGAGTTCCCCAAGAAACCCCCGAAGAGAAGAGAGTAGAAGAGCTGGAGCAGGCCTTAAACAAGCTCTCCACAGATAACACCAAACTCCGCAAAAAAGAGAAAGCTGACCTCACCGGTGAAATAAAATCTCTGAATACTCTTCTGGATCAGCAGAAAGTTCTGTATGGTATCCTTAAGAGTAACTTCAGTCAGACAGTGGAGTACCTTAAAGCTGACTTGGACAACGCAGTGAAGGATAAAAACGAGCATCATACCTAGGTGATACAACTAAGACAGGGAAACATGAATTTGAAATCCCTGCTTGATGTTTACACCAAGAAATACAAAGAAGACTTTGCAGACTCCCTCCAAGGCATCCAGACAGTCACAAATGCCTTCCTAACAAAAACTGATAACTTCTTCACCAACTCATGTTTCACCTCACCTGCCAGAAACAGGAAGAACAGATGAATATGATTCGCTCCAACTGCTCCAGCCTTTTTTGGCAGGTGGAGGACAAGTTCCAGAGCTACCTGAACAATGTGGGAGCGAAAGTCTCGAACATTCAAAAACAGAGCAGTTGGTTGGAAGTACAGAATATGAGGCTGACTTCAGAAATGGACAAGTGCAAAACAGGTTGAGACAAAGAGGCTGCAGACAGCAGCAAAAAA

Function

symbol description
plvap Predicted to enable identical protein binding activity. Involved in MAPK cascade; positive regulation of cellular extravasation; and tumor necrosis factor-mediated signaling pathway. Located in cell surface. Colocalizes with caveola. Implicated in congenital diarrhea.

NR:

description
Zgc:136228

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K17309 PLVAP; plasmalemma vesicle-associated protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000051_06739181_06742303.mRNA False 683 mRNA 0.44 3 6738789 6742303

Neighbor

gene id symbol gene type direction distance location
CI01000051_06423541_06426013 NA coding downstream 311176 6422096 ~ 6427613 (-)
CI01000051_06366293_06372185 DTL coding downstream 366604 6366118 ~ 6372185 (-)
CI01000051_06332084_06361639 PPP2R5A coding downstream 376942 6331867 ~ 6361847 (-)
CI01000051_06201120_06284027 ENPP1 coding downstream 454005 6200459 ~ 6284784 (-)
CI01000051_06189714_06192740 NA coding downstream 546049 6189612 ~ 6192740 (-)
CI01000051_06803307_06824913 GNPAT coding upstream 61004 6803307 ~ 6824913 (-)
CI01000051_06837978_06881158 TRIM67 coding upstream 95111 6837414 ~ 6881706 (-)
CI01000051_06884323_06886377 EXOC8 coding upstream 141705 6884008 ~ 6886639 (-)
CI01000051_06910132_06916487 NA coding upstream 167137 6909440 ~ 6916487 (-)
CI01000051_06958650_06963551 CLEC11A coding upstream 216269 6958572 ~ 6963821 (-)
G222054 NA non-coding downstream 48884 6663608 ~ 6689905 (-)
G221890 NA non-coding downstream 341802 6396781 ~ 6396987 (-)
G221858 NA non-coding downstream 543894 6194660 ~ 6194895 (-)
G221837 NA non-coding downstream 636787 6101722 ~ 6102002 (-)
G221836 NA non-coding downstream 638026 6100559 ~ 6100763 (-)
G222137 NA non-coding upstream 20887 6763190 ~ 6763420 (-)
G222173 NA non-coding upstream 230779 6973082 ~ 6994996 (-)
G222190 NA non-coding upstream 268730 7011033 ~ 7011313 (-)
G222194 NA non-coding upstream 271802 7014105 ~ 7014311 (-)
G222195 NA non-coding upstream 274656 7016959 ~ 7051677 (-)
G221840 NA other downstream 605210 6132773 ~ 6133579 (-)
G221575 NA other downstream 1219965 5513952 ~ 5518824 (-)
G220041 NA other downstream 2580686 4155730 ~ 4158103 (-)
CI01000051_02955633_02960400 SCRN2 other downstream 3777295 2955380 ~ 2961148 (-)
G218861 NA other downstream 3898157 2840270 ~ 2840632 (-)
G222729 NA other upstream 1599846 8342149 ~ 8342652 (-)
G222730 NA other upstream 1600667 8342970 ~ 8343438 (-)

Expression


Co-expression Network