CI01000052_02030095_02036209 (ALX3)


Basic Information

Item Value
gene id CI01000052_02030095_02036209
gene name ALX3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000052
NCBI id null
chromosome length 3494004
location 2029869 ~ 2036635 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000052_02030095_02036209.mRNA
TTATAAAGGCTCAGCCAGTCACAATTACTCGATTTAATCACATTGTCCTATCTCTCATAACAATTTTGTTTTATTAAGAGAAAATGTTTTGGAGGTAGTAAATGGTTAATTGACAGGATCCGCACGTGACTGATTTCTGGGCGTATTGAATCAGACCGCTGTCTCACTCTTTCCCTCCCAGTTCACGGGTCTTTGTTTCTGATCCTCTAAATCCCACCCACTTGAAATGGAGAGGTGGAAAAAAAATCCCCATCTCGCTCGCTCATACACTAACTTGTCCCCTGTTAATAGCATCCTAGTCCGCTATTTGCGCTCTTGTGCTCGGGACGAGGTGATGGAGACTGAGAATTGTTTGTCTTTCTCCTCGCCTCCAAACAGGATCACGCCGGAGAATTCACCGGGTTTGGAGCATAATTCCGGCTCTTTCTTTCCGTGTGACGACCTTCAAAAGTCTCCGCATCTTCCTTTAGCGCATCGACATGAGTTTTTTATGGGACGCTACGCTGACGGCGGCTCCGCGGACTTTACGCACGGGGTCAGCACAACAGATCCCCGCGCCTCGCCTGGAAAGCATACCAAGTATTTGGAGAATATGAATCAGGACCAAAAAACTTCTTCGATCACTGAGAAGAACTCTTCATTTTATGAGACTAATTCCGATGGAGAGAAGACCCTACCCAAACCCCTTGGCTATCCTGCACTAAACTCAGATTGCTGTGGAAAACTCAAAGAGCCGTCCAATGAGCTGGCTGGAGACTCCATCGCTGACTCCATCGATCTTTCTTGCAAGAACAAGAAGCGGCGAAACCGGACAACTTTCAGCACCTTTCAACTGGAGGAGCTGGAGAAGGTCTTTCAAAAGACACATTACCCAGATGTGTATGCAAGGGAACAGCTGGCACTGAGGACGGAGCTCACAGAGGCAAGAGTGCAGGTGTGGTTCCAAAACAGACGGGCCAAATGGAGAAAAAGAGAGCGCTATGGGAAGATGCAAGAGGTGCGAAACCACTTCGCTGCTACATACGATATCTCCCTTCTCCCTCGCTCCGACACATATCAGATGCAAAATAACCTATGGCCAAGCAGTGCAGGAACGGGAGGCGCGGGCGGAGCGGCCAGTGGTTGTGTTCTGGGCACGGAAAACATGGCGTCATCCTGTATGACCCCTTATCCCCATCCTCACGGCAACCTACCCGGGCTTATGAGTATGTCTGCATCTGCAGGCCATCCTCCTCATCATCATCATCATCACCACCCACCCCACCACCCTAGCATCAACGGGATATACTCACTCCATGGCTTCCCAGGAAGCCTGGGGGCCCATTCCTTTGAGCCCGGACCAGAGTCTGAATACAAGCCCTCAGGCCTGGTGGCCCTGCGCATGAAAACCAAAGACCCTGGGAGCCTGTTATCCTGGCCGACATGACCGTGCAGCTGCAATTGAGATGACATCACTGAGCCAACAAACATTTAGCATGCCTGCACATACCGGCATGTTCGTGTTACTCAGAAACACACAACTGAAAGACACTATTTTTAAATGCTCAATGTACATGTTTCTTTTTTGCAGGCTTCCAGGTGTTTTCACTGCAAAGAACCGGACTCTTTGTGTTGATCTCTTTCGCTATGGAAGCATCTCATTTGTTTGTGTGATTTTGCTGAAACCCAATGAGCCATAATGGGCTTTGCACACAACTTGCCTTAATATAAAATTCTTTCTGGGATACTAAAATTGTAAAAATGGTGTAATATTAATTACCAAAGAGGATGTGCAACATGTTTATTTAAGTATGTTAATGTTAATCTCATAGTTTCAGTGTATGCAGTGTTTTAGCCCCATTAGCCCCAGTCA

Function

symbol description
alx3 Is expressed in cranial neural crest; head mesenchyme; neural crest; neurocranium; and periocular mesenchyme. Orthologous to human ALX3 (ALX homeobox 3).

GO: NA

KEGG:

id description
K09323 ALX3; homeobox protein aristaless-like 3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000052_02030095_02036209.mRNA True 1852 mRNA 0.48 4 2029869 2036635

Neighbor

gene id symbol gene type direction distance location
CI01000052_01929151_01946893 KCNC4 coding upstream 82697 1929151 ~ 1947172 (+)
CI01000052_01925657_01927599 HSPA6, HSP70B, HSP70A, HSP70.1, HSP70-5, HSP70.3, HSP70.2, HSP70L coding upstream 102088 1925657 ~ 1927781 (+)
CI01000052_01896445_01921839 AHCYL1 coding upstream 107900 1894819 ~ 1921969 (+)
CI01000052_01887034_01894583 NFYA coding upstream 135286 1886982 ~ 1894583 (+)
CI01000052_01863516_01880476 SORT1B coding upstream 148887 1863138 ~ 1880982 (+)
CI01000052_02040372_02042933 RBM15 coding downstream 3737 2040372 ~ 2043241 (+)
CI01000052_02077422_02080093 PROK1 coding downstream 40787 2077422 ~ 2080335 (+)
CI01000052_02120654_02122805 NA coding downstream 83725 2120360 ~ 2123260 (+)
CI01000052_02167466_02172193 ADORA1, ADORA1B coding downstream 129949 2166584 ~ 2173036 (+)
CI01000052_02182830_02186951 NA coding downstream 145305 2181940 ~ 2187178 (+)
G223718 NA non-coding upstream 26190 2003427 ~ 2003679 (+)
G223714 NA non-coding upstream 29961 1999666 ~ 1999908 (+)
G223691 NA non-coding upstream 30324 1980453 ~ 1999545 (+)
G223690 NA non-coding upstream 62507 1967143 ~ 1967362 (+)
G223663 NA non-coding upstream 201153 1828401 ~ 1828716 (+)
G223733 NA non-coding downstream 35073 2071708 ~ 2087653 (+)
G223694 NA non-coding downstream 61905 2049326 ~ 2104299 (+)
G223770 NA non-coding downstream 126217 2162852 ~ 2163120 (+)
G223773 NA non-coding downstream 138392 2175027 ~ 2175807 (+)
G223775 NA non-coding downstream 144949 2181584 ~ 2181793 (+)
G223545 NA other upstream 758942 1270492 ~ 1270927 (+)
G224953 NA other downstream 1394501 3431136 ~ 3460136 (+)

Expression


Co-expression Network