CI01000052_02182830_02186951


Basic Information

Item Value
gene id CI01000052_02182830_02186951
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000052
NCBI id null
chromosome length 3494004
location 2181940 ~ 2187178 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000052_02182830_02186951.mRNA
TTATAAATAAACTTGAACTTGAATTTGAACCTGGGCTGTAAAGCGAAAGTTAAGCGAACAGCACCGCCCAGTGGTTACATGTTCAAATGAAAATATAGTTTATTATATATGATTTTATTACATAATTAACTGCTTCTCAAAGTCAAGCACAAACAGAAAGAAAGAAAGAAAGAAAGAAATGAACTCAAGCGGCATTTTAAAAGCATCTTATTTGAAGTTTGAACGGCACTTAATATCATCTACGGTGATCAATACTCTTAAAAATGTGATATTTGGTGGAAGCTGCTGTTTCTATGGCAATTACTGGTCTGAGCTCAAGGCTGGCAGCAAAAGTCCCGAAATCTGCACATTACGGAAGTCAGTGACGTCACATGAGCTCGTGAGCGACATGGAGGCGTGGACAATAAACGTATTTTTTGGCGGACAACCCAGCTGCAAATGCCACAGAGTGATTTCAAAGCGCGCTGAAATATTTTGAATTGGTAAACACATCGCGACCCTTGAAAGTCCAATGCTAGGTTTAGCATGGCGCTCATCTGCACAAATAGACAATATCATCATCTGCCCGGCTAACCGGCCTACTAAAACACTCGGATGAAAACTGACTGGCAAGCATGCAGTTACATTTATTATTTTTTTTTGTCTGACTTTCCGCATAAGCAAAGCGAAACTTAAATGCGATGCCGCTATTTCTTTACAGCTAACGCTGCTTGTTAGACTGTTACATTGCACTTGCCAATGCATATTTAATATTGTGTTTGTTTACTGCTAGAGAAGTGACGCTTTTCAAACACCAACAAAACCAGTGCAACTGAATACAGCTTTTGTCAAAAAAAATATTTTTAGGAATAAGCTGTAGGTACCGCCTGAGCACCTCACAGAAGCACAAAATGAACGGAAAAGTCCTACCAGACACTCCTATAGCCGTTGACTGCTGGCAGCTCCGTAAGTGCCATCACGTCCGTCTGTTCTTTCTGTCTCACATGCACGCGGATCACACCTCTGGCCTCTCATCCACCTGGAGTCACAGGCCCATCTACTGCTCACCTCTCACTGCCAAACTGCTCCAGCTCAAGCTGAAGGTCAAAGAGAAGTGGATTCGTCCTTTAGAGATTGGGGAAGCTCACATGCTGATGCTAGATGATCTTGGAAAAGAGCGTCTGACCGTTACTCTAATAGATGCCAATCACTGTCCTGGGGCAGTTATGTTTCTCTTCGAGGGATACTTTGGCACCAGACTCTACACTGGTGACTTCCGTTATACCCCATCCATGCTCCGTGAGCAGTGTCTGAGGAACAACACTACCATTGATGTGCTGTATCTGGACAACACAAACTGTGACCCCACTCGAGCTGTGCCTTCTCGTCAGCGAGCCACTCAGCAAATTAAAGAGATCATTAGGGCTCATTCTGGATATGCTGTCGTTATTGGTCTTTACTCTCTGGGTAAAGAGTCTCTGCTGGTGGAGCTGGCTATGGAGTTTAAAACATGGGTGGAGGTGGATAGGGAGCGTCTGGAAACCTTGCAAGTCCTGGAGCTCCCTGACGTTTTCACCACTGACTCTGGTGCGGGCCGTATTCGCGTGGTCTCTCAGTCTGTGATCAACGCCTCCAACTTGCAGGCATGGAATAAAGTGCAGCCTACCATCGCTATATTGCCCACCAGCCGCCCTATGGTCTCCTGCCACCGTAATGTCTATGTGGTGCCATACTCGGATCATTCCTCCTACCAGGAGCTAGAGGACTTTGTGTCTGCCCTTCGTCCTGTCTCGCTAGTGCCTATTGTGGGCAACTGCCTGCCTTATTTTTCTTCCCTTCTGAGTCCCCGCAAGAAGTCTAAAGAGGTGGTGATTCCAGAATCGGTCAAGCACTACATGATGACCAATTCTAATATTCAGGCCTCCACAAACGGCATAACAGGCATGCTTCAAAGAACATCACGTTCAGAGTCTCGAGGGGTGGTGTTTGACTCTCCAGAGTCAAAAATAACCCGACTTAGTCACAATGACAGGGATTCGAATGATGCAGAGGTAGATCATGATACTATAGATGGGAATTCTGAGATGGATCAAGATTCTGACTGCGTTCTTCTAGACATGAGCACCGACTCATATCACGGCCCACGTGGCAAGCGTTTGAATCTCGTCCGAGTTGCATCAGAAGATGTCGTCACGATTGGCAGCAGCCTTCCTCCGGAGGACAATGAATCCATTAGTACACTTAAAGATGTAGGATCACCTGATCGCAGCTCCATGTACGAATGTGAGCATGAAAGTCCAACAAAATCATCCAAGGAGAAGAGTCCTCAAATGGGCAGCACCAACTCTAGAGCGATGTGCTCTTCAATGGACAGCATCAGTATCCATGATCAAACCTGTGTTACCGCTTCAGCTGCACTCACACCCCCTGAAACAAGATCAGTGACCTCTGCCTTGACCCTCATATTAGAGCGAGAGCAGTGGCTCCTTCAGAACTTCACCATACCTGCTGAAGAATGCAAAAGTGACCAGGTGTTATGTGGACATCATGAAAAGTATCGCATTAATCAAGTTGATCTTCCTAAACCACCAGGTGATCCTCTTGAAGCGGCTATAAAGAGATTTAAATCTAATTAAATCAGTTTGTGATTAAGATCACATTTATGTTCATGTAAATGCTTAATTATTATGTATCAGTGCTGTGCCAATAACTAATTCTTACATACGTTGGATCAATTTGATGGTATTATTTTCACCACAGAAACACGGAGGTTCTAATGTCTGAAATATGTCATCATACCTTTGTTTTCAAATGTAGCATTACAAAGCACCTTATTGTGTTTTTTAGTATGAAAAAAATGTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000052_02182830_02186951.mRNA True 2842 mRNA 0.44 4 2181940 2187178

Neighbor

gene id symbol gene type direction distance location
CI01000052_02167466_02172193 ADORA1, ADORA1B coding upstream 8904 2166584 ~ 2173036 (+)
CI01000052_02120654_02122805 NA coding upstream 58680 2120360 ~ 2123260 (+)
CI01000052_02077422_02080093 PROK1 coding upstream 101605 2077422 ~ 2080335 (+)
CI01000052_02040372_02042933 RBM15 coding upstream 138699 2040372 ~ 2043241 (+)
CI01000052_02030095_02036209 ALX3 coding upstream 145305 2029869 ~ 2036635 (+)
CI01000052_02310477_02312424 LHFPL5B, LHFPL5, LHFPL5A coding downstream 122701 2309879 ~ 2312907 (+)
CI01000052_02374792_02389760 NA coding downstream 187534 2374712 ~ 2390103 (+)
CI01000052_02397395_02408461 MGC78985, NCS1A, NCS1B, NCS1.L, NCS1 coding downstream 210217 2397395 ~ 2408539 (+)
CI01000052_02417407_02438433 HMCN2 coding downstream 230194 2417372 ~ 2438924 (+)
CI01000052_02439580_02463549 HMCN2 coding downstream 252402 2439580 ~ 2465673 (+)
G223775 NA non-coding upstream 147 2181584 ~ 2181793 (+)
G223773 NA non-coding upstream 6133 2175027 ~ 2175807 (+)
G223770 NA non-coding upstream 18820 2162852 ~ 2163120 (+)
G223694 NA non-coding upstream 77641 2049326 ~ 2104299 (+)
G223733 NA non-coding upstream 94287 2071708 ~ 2087653 (+)
G223825 NA non-coding downstream 75616 2262794 ~ 2288556 (+)
G223828 NA non-coding downstream 107780 2294958 ~ 2295310 (+)
G223829 NA non-coding downstream 110451 2297629 ~ 2297861 (+)
G223807 NA non-coding downstream 128541 2315719 ~ 2320596 (+)
G223834 NA non-coding downstream 139405 2326583 ~ 2326818 (+)
G223545 NA other upstream 911013 1270492 ~ 1270927 (+)
G224953 NA other downstream 1243958 3431136 ~ 3460136 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036442 dclre1b coding NC_007119.7 CM002892.2 24107030 ~ 24113604 (-)