CI01000052_02310477_02312424 (LHFPL5B, LHFPL5, LHFPL5A)


Basic Information

Item Value
gene id CI01000052_02310477_02312424
gene name LHFPL5B, LHFPL5, LHFPL5A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000052
NCBI id null
chromosome length 3494004
location 2309879 ~ 2312907 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000052_02310477_02312424.mRNA
CAATAAAAGAGCCCTCAACTGAGGCTTATAATTGGTGTCAAGGATCCCCTCATACAGACACTGAACAAACTGTGACTACATCATTTATAACACTTATAAATGTTATTTTATAACATAAAATAACATTTTCTGAGTAAAACTGTTTGTTTTGGTGAGATAAAGTTGTCAATCTGGTGGACACAAAGTTGTGTTACATAGATTTGGCAAGTATTGAGTGCAGCTTTTTACAAAAGATAAAGAGTCAGAACACAATAGCTATTCTTTTACTGTGAAGTAACAAACATATCTGATTACAACATCTAACAGGTTATTGTCGTCACCTTATTCCTTGGCTGAATTTACCATTAATAATTTAAAAACTGACACCTTTGTTGGCACCAACATTGTTTCTGACACTGTTTCACTGGTGACGGTCTCAGCAGCATTTGGACTTCATCAGACTTAAATTCTTTGAAAAAGAAGAACTAATAAGCTACAGTATGATAGGAGCTGTCAGTGGTGCTGGATTCTGAATTAGATTTTCATCTGGTCTGGTTTTCTTCTTGAGAAATATCTACAGATTTCTAACATCACTAGATAAACGTAAATCGAGCTAATAATGGCGAATGAGAAGATGCTTCCAGCCCAAGAGGCTGCTAAAATCTACCACACCAATTATGTGAGAAATGCCAGAGCCATCGGCGTCCTGTGGGCGGTTTTCACCATATGCTTCGCCATCATTACTGTTGTCGTCTTCATTCAGCCATATTGGATTGGTGACAGTGTTAACACCCCGCAGGCTGGATACTTTGGGCTTTTTCACTACTGTATTGGCAACCCCATCACCTCTGAATTGGTCTGTAAAGGAAGCGTGTTTGATTTTGGCTCAATCCCCTCTGGGGCTTTCAGGACTGCTATGTTTTTTGTAGGCACCTCAATGCTCCTTATCGTAGGCACCATTGTGTGCTTGGGTCTTTTCTTCTTCTGCAACTCCGCAAGTGTGTACAAGATATGCGCATGGATGCAAACATCTTCAGCTGTGTTGATGGTGATGGGTTGTATGATTTATCCGGACGGGTGGGATGCTCCGGAGGTAAAGCGAATGTGTGGCGAGCGGACGGACAAGTACACGCTGGGGAACTGCACTGTTCGCTGGGCTTATATTCTAGGCATTATCAGCATCCTGGACGCAGGGTTACTGGCACTGCTTGCTTTCACTCTGGGCAACCGGCAAGACAAACTGCTGCCAGACGACTTCGAGGTGGAGGGAGCAAACAACGGATGAGATAAGAGAAGTAATGATTAATCTGATTTTTGAGATTAATTAGCTATAATTAATGACTCATAATTTAGAGCAAGACTTGAAGTTACACTTGAGATGAACTGGAGAGACTGCCACTTGAAAACTATCACTAGAAAAAAACGTGCCAATAAATTAATTATTAATATAATATGAATTATACAATAATTACTATTATATATACTATTTTACTATATGTAATAAAAGTATCTACCCTATACTAAATTATTCACGACTGTATTTAGGATGCATCCTATAGAAATACAATACAAAATGTACAATTTTAGTGACAATGATGGTGTTTCCATTTGTTTACAGATAAAACCTTAATCCAACAGAAGATCTAAACTGCAGTGGACATGGAACTGGATATTTTTACAAAAGAAAATGTAATCATAAAATTGTAAACCTAAAGAAAAACAGTTTCAATTAAATTCAAATGTATGTATATGCATAGCACATTTCATA

Function

symbol description
lhfpl5a Acts upstream of or within detection of mechanical stimulus involved in sensory perception; inner ear receptor cell stereocilium organization; and protein localization to cilium. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in anterior macula; hair cell anterior macula; hair cell posterior macula; and posterior macula. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 67. Orthologous to human LHFPL5 (LHFPL tetraspan subfamily member 5).
lhfpl5b Acts upstream of or within neuromast hair cell morphogenesis. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in neuromast and neuromast hair cell. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 67. Orthologous to human LHFPL5 (LHFPL tetraspan subfamily member 5).
lhfpl5 Predicted to be involved in detection of mechanical stimulus involved in sensory perception and sensory perception of sound. Predicted to act upstream of or within auditory receptor cell stereocilium organization and detection of mechanical stimulus involved in sensory perception of sound. Predicted to be located in stereocilium bundle. Predicted to be active in plasma membrane. Implicated in autosomal recessive nonsyndromic deafness 67.

NR:

description
Zgc:171589 protein

GO:

id name namespace
GO:0008150 biological_process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000052_02310477_02312424.mRNA True 1747 mRNA 0.38 2 2309879 2312907

Neighbor

gene id symbol gene type direction distance location
CI01000052_02182830_02186951 NA coding upstream 122701 2181940 ~ 2187178 (+)
CI01000052_02167466_02172193 ADORA1, ADORA1B coding upstream 136843 2166584 ~ 2173036 (+)
CI01000052_02120654_02122805 NA coding upstream 186619 2120360 ~ 2123260 (+)
CI01000052_02077422_02080093 PROK1 coding upstream 229544 2077422 ~ 2080335 (+)
CI01000052_02040372_02042933 RBM15 coding upstream 266638 2040372 ~ 2043241 (+)
CI01000052_02374792_02389760 NA coding downstream 61805 2374712 ~ 2390103 (+)
CI01000052_02397395_02408461 MGC78985, NCS1A, NCS1B, NCS1.L, NCS1 coding downstream 84488 2397395 ~ 2408539 (+)
CI01000052_02417407_02438433 HMCN2 coding downstream 104465 2417372 ~ 2438924 (+)
CI01000052_02439580_02463549 HMCN2 coding downstream 126673 2439580 ~ 2465673 (+)
CI01000052_02468269_02501109 HMCN2 coding downstream 155362 2468269 ~ 2501174 (+)
G223829 NA non-coding upstream 12018 2297629 ~ 2297861 (+)
G223828 NA non-coding upstream 14569 2294958 ~ 2295310 (+)
G223825 NA non-coding upstream 21323 2262794 ~ 2288556 (+)
G223775 NA non-coding upstream 128086 2181584 ~ 2181793 (+)
G223773 NA non-coding upstream 134072 2175027 ~ 2175807 (+)
G223807 NA non-coding downstream 2812 2315719 ~ 2320596 (+)
G223834 NA non-coding downstream 13676 2326583 ~ 2326818 (+)
G223843 NA non-coding downstream 48137 2361044 ~ 2361448 (+)
G223801 NA non-coding downstream 58794 2371701 ~ 2371846 (+)
G223806 NA non-coding downstream 98401 2411308 ~ 2414717 (+)
G223694 NA other upstream 205580 2049326 ~ 2104299 (+)
G223545 NA other upstream 1038952 1270492 ~ 1270927 (+)
G224953 NA other downstream 1118229 3431136 ~ 3460136 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036441 lhfpl5b coding NC_007119.7 CM002892.2 23876928 ~ 23885016 (-)