G223691


Basic Information

Item Value
gene id G223691
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000052
NCBI id null
chromosome length 3494004
location 1980453 ~ 1999545 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU253726
GTCCTCTTTCACAATCTTTATTACGCCGTACATCTCAGCATAGTCCGACGAGCTGAGGTGGGAAAAGTTGACGTGAGGGGGGATGAGATCCTGACTCAGCACATTTGAGTTCAAGTAGCCTAGAATCTTTTCAGCATTCTCCACAACACATTTCTCGTTCATGATGTTGGCTTTGAAGCCCAGCACAGCAAACACCACGAGTGTGGCCAGTATAGAGGTCATGAAGTTGATGAAGGAGACCAGCACGGCATCAAAATGACAGTTGTTGTCTCTTTTATTGTAACTGGAAAAAGCGATGACACCTCCAAAACCCAGACCAAGAGCAAAGAAGACCTGTGTGGCAGCTTCACGCCATACTTGCGGCTCCAACATGATCTCCAGCTTGGGTGTGAACATGTGAGCAATGCCGTCTACTGCTCCTTTAAGAAATATTCCTCTCACTAGGAAGCAGAAGAGCACCACGTATGGAAAGAGTGAGCTGAAGTACATCACCTTCCCAGAAGACTGAATGCCCTTTACTACAGCCAGGCAGACAATTATCCAGGCTGCCAGCAGCGACAAAGTCATCTTCCAGTTCAGACCCCCGCTGTCTGCGATTGTGCTGGTGATGTTCAGGGTCTCGCGGTACCAGAAGTACGTGGTTGCTGAGCTCTTCTCACACTCAGGCTCCACAAAGGCTTGGCTGCCATTCCTCCTGATGGGACATTCGCTCCAGGGTAGAGGATACTGAAACGACTGAAAAAAGTAGAAGATGCTCCAGCCGATAATCACATTATAATACAGACCCACAAAACCACACACCATCAGGCTGGACACTCCAATGCCACCGAGTCGTGGGCAAACATAATTCCACACTCCAATGCTCCCTCGACGAATCCTCTGGCCAACTGCCAGCTCCAAGAAAAAGAGTGGGATGCCAATAAGAATAAGAAGGATGAAGTATGGAACAAGGTAGGCACCTCCTCCGTTCTTCTGGCAAAGATAAGGGAAACGCCACACGTTACCCAGGCCCACCGAGAAGCCCACCTGGGCCAGGATGTACTGCAGCTTACTGTTCCAGGCAGGTCGACCGTCTTCCAGGTCGGGGGAGATGTCTGGTTTGCCTATGGGCGGAGGGCCCCCTCCTGTCATGTTCATGCTCATCTGGCTGCTCTTGTAGTCCATGGGGGCCTCCAGCGCCAGGAGGTCGGCCACAGACTCTGTAACATGCTCATTACTGTGCTCGCGCTGAGTCACTTTACTGCTTTTGGGCATGGCTGTGCCGTATTGTGGTGATCCCAACAATTAAAGGTGTGAAAGAGGAGCAGGGCAGAATGGAGGTCACAATAACTGCCCCTTTGGCTTGATACAGGTGTGGAGAATGAAGGTTTGTGCTCTGGATGTCGAAGAGTGAGAATTAGATGCGAGTGTGCTCAAATAGGTCTCAATGACTGACAATAATCAATTTGATGGCTCCCATAGAATGAATCCTCGATGATGTGCCGTTTCCGCGCTCACGACTGAACCTGTCCAGAAATGCGCAGAGTGAGTGAGCGCGCCGCCTGACGCAAAGCCCACCGCGCACTATTGTGTATTCTCTATCAGCCCAAAATAGTAACTTTGGGGTCACGCTGACACATCCGTGGGCGTTGTCCGCGACAACACTTCTAACCAACCCACTCTTTGATTTGTCTTCCAGCGGTTAAAATTCAAAGCACAACTTATTTCTCCTTACACTATTGGCAGAGAGCAAATTACT
>TU253727
GTCCTCTTTCACAATCTTTATTACGCCGTACATCTCAGCATAGTCCGACGAGCTGAGGTGGGAAAAGTTGACGTGAGGGGGGATGAGATCCTGACTCAGCACATTTGAGTTCAAGTAGCCTAGAATCTTTTCAGCATTCTCCACAACACATTTCTCGTTCATGATGTTGGCTTTGAAGCCCAGCACAGCAAACACCACGAGTGTGGCCAGTATAGAGGTCATGAAGTTGATGAAGGAGACCAGCACGGCATCAAAATGACAGTTGTTGTCTCTTTTATTGTAACTGGAAAAAGCGATGACACCTCCAAAACCCAGACCAAGAGCAAAGAAGACCTGTGTGGCAGCTTCACGCCATACTTGCGGCTCCAACATGATCTCCAGCTAAAATTAAATAAATTAAAACAAGTAAAT
>TU253728
TGGAACAACATGAGGATGAGTAATTAATGACAAAAAAAAATCATTTTTGTGTGAACTAGCCCTTTAAAATCAACAATTTAAACGCAACCATTTTCACACAAAAAATTGATGCCCTCCATTTACGCATAAACATTCTTAAACCACGTTAAGCAACATTATCTCAATCGAGAACGACTGCTCATTTGTGTCATGTGTTTCAGTCCACTACCTTTAAAAGAACATCAGTCACTCACCATCAGGCTGGACACTCCAATGCCACCGAGTCGTGGGCAAACATAATTCCACACTCCAATGCTCCCTCGACGAATCCTCTGGCCAACTGCCAGCTCCAAGAAAAAGAGTGGGATGCCAATAAGAATAAGAAGGATGAAGTATGGAACAAGGTAGGCACCTCCTCCGTTCTTCTGGCAAAGATAAGGGAAACGCCACACGTTACCCAGGCCCACCGAGAAGCCCACCTGGGCCAGGATGTACTGCAGCTTACTGTTCCAGGCAGGTCGACCGTCTTCCAGGTCGGGGGAGATGTCTGGTTTGCCTATGGGCGGAGGGCCCCCTCCTGTCATGTTCATGCTCATCTGGCTGCTCTTGTAGTCCATGGGGGCCTCCAGCGCCAGGAGGTCGGCCACAGACTCTGTAACATGCTCATTACTGTGCTCGCGCTGAGTCACTTTACTGCTTTTGGGCATGGCTGTGCCGTATTGTGGTGATCCCAACAATTAAAGGTGTGAAAGAGGAGCAGGGCAGAATGGAGGTCACAATAACTGCCCCTTTGGCTTGATACAGGTGTGGAGAATGAAGGTTTGTGCTCCTGTGAAAAGAGCATGAAAATATTAGAAATCGGGCTACAAGAGACGAAATTATGGCTATGGGATAGACCAAATCATCTTCTAAATTCATGTCCATTTGTGTTACATTTAACAAAATAATATTTTTCTGGTGTTCTGTTGGCTGTTGAATTTTATAGCTGAAGCTTAAATATTATTCTGATTTATTAAAACTATCATAGGATTGCTTTTGGCTCTGGACTATAGAATAAATTTCATAAAAAGCTAAGCAATCTGTTGTAATGGCAGCCAAGGCAGTCACTGGTAGGACAGATGGGAAGATTTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU253726 False 1738 lncRNA 0.50 8 1980453 1999545
TU253727 False 411 lncRNA 0.45 2 1980453 1981039
TU253728 True 1111 lncRNA 0.44 2 1986431 1992412

Neighbor

gene id symbol gene type direction distance location
CI01000052_01929151_01946893 KCNC4 coding upstream 33281 1929151 ~ 1947172 (+)
CI01000052_01925657_01927599 HSPA6, HSP70B, HSP70A, HSP70.1, HSP70-5, HSP70.3, HSP70.2, HSP70L coding upstream 52672 1925657 ~ 1927781 (+)
CI01000052_01896445_01921839 AHCYL1 coding upstream 58484 1894819 ~ 1921969 (+)
CI01000052_01887034_01894583 NFYA coding upstream 85870 1886982 ~ 1894583 (+)
CI01000052_01863516_01880476 SORT1B coding upstream 99471 1863138 ~ 1880982 (+)
CI01000052_02030095_02036209 ALX3 coding downstream 30324 2029869 ~ 2036635 (+)
CI01000052_02040372_02042933 RBM15 coding downstream 40827 2040372 ~ 2043241 (+)
CI01000052_02077422_02080093 PROK1 coding downstream 77877 2077422 ~ 2080335 (+)
CI01000052_02120654_02122805 NA coding downstream 120815 2120360 ~ 2123260 (+)
CI01000052_02167466_02172193 ADORA1, ADORA1B coding downstream 167039 2166584 ~ 2173036 (+)
G223690 NA non-coding upstream 13091 1967143 ~ 1967362 (+)
G223663 NA non-coding upstream 151737 1828401 ~ 1828716 (+)
G223644 NA non-coding upstream 210269 1769954 ~ 1770184 (+)
G223643 NA non-coding upstream 210594 1769541 ~ 1769859 (+)
G223635 NA non-coding upstream 241983 1738234 ~ 1738470 (+)
G223714 NA non-coding downstream 121 1999666 ~ 1999908 (+)
G223718 NA non-coding downstream 3882 2003427 ~ 2003679 (+)
G223733 NA non-coding downstream 72163 2071708 ~ 2087653 (+)
G223694 NA non-coding downstream 98995 2049326 ~ 2104299 (+)
G223770 NA non-coding downstream 163307 2162852 ~ 2163120 (+)
G223545 NA other upstream 709526 1270492 ~ 1270927 (+)
G224953 NA other downstream 1431591 3431136 ~ 3460136 (+)

Expression


Co-expression Network