RNA id: TU253728


Basic Information

Item Value
RNA id TU253728
length 1111
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G223691
representative True

Chromosome Information

Item Value
chromosome id CI01000052
NCBI id null
chromosome length 3494004
location 1980453 ~ 1999545 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGGAACAACATGAGGATGAGTAATTAATGACAAAAAAAAATCATTTTTGTGTGAACTAGCCCTTTAAAATCAACAATTTAAACGCAACCATTTTCACACAAAAAATTGATGCCCTCCATTTACGCATAAACATTCTTAAACCACGTTAAGCAACATTATCTCAATCGAGAACGACTGCTCATTTGTGTCATGTGTTTCAGTCCACTACCTTTAAAAGAACATCAGTCACTCACCATCAGGCTGGACACTCCAATGCCACCGAGTCGTGGGCAAACATAATTCCACACTCCAATGCTCCCTCGACGAATCCTCTGGCCAACTGCCAGCTCCAAGAAAAAGAGTGGGATGCCAATAAGAATAAGAAGGATGAAGTATGGAACAAGGTAGGCACCTCCTCCGTTCTTCTGGCAAAGATAAGGGAAACGCCACACGTTACCCAGGCCCACCGAGAAGCCCACCTGGGCCAGGATGTACTGCAGCTTACTGTTCCAGGCAGGTCGACCGTCTTCCAGGTCGGGGGAGATGTCTGGTTTGCCTATGGGCGGAGGGCCCCCTCCTGTCATGTTCATGCTCATCTGGCTGCTCTTGTAGTCCATGGGGGCCTCCAGCGCCAGGAGGTCGGCCACAGACTCTGTAACATGCTCATTACTGTGCTCGCGCTGAGTCACTTTACTGCTTTTGGGCATGGCTGTGCCGTATTGTGGTGATCCCAACAATTAAAGGTGTGAAAGAGGAGCAGGGCAGAATGGAGGTCACAATAACTGCCCCTTTGGCTTGATACAGGTGTGGAGAATGAAGGTTTGTGCTCCTGTGAAAAGAGCATGAAAATATTAGAAATCGGGCTACAAGAGACGAAATTATGGCTATGGGATAGACCAAATCATCTTCTAAATTCATGTCCATTTGTGTTACATTTAACAAAATAATATTTTTCTGGTGTTCTGTTGGCTGTTGAATTTTATAGCTGAAGCTTAAATATTATTCTGATTTATTAAAACTATCATAGGATTGCTTTTGGCTCTGGACTATAGAATAAATTTCATAAAAAGCTAAGCAATCTGTTGTAATGGCAGCCAAGGCAGTCACTGGTAGGACAGATGGGAAGATTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253727 lncRNA upstream 5392 1980453 ~ 1981039 (+) False G223691
TU253725 lncRNA upstream 19069 1967143 ~ 1967362 (+) True G223690
TU253698 lncRNA upstream 157715 1828401 ~ 1828716 (+) True G223663
TU253679 lncRNA upstream 216247 1769954 ~ 1770184 (+) True G223644
TU253678 lncRNA upstream 216572 1769541 ~ 1769859 (+) True G223643
TU253765 lncRNA downstream 7254 1999666 ~ 1999908 (+) True G223714
TU253769 lncRNA downstream 11015 2003427 ~ 2003679 (+) True G223718
TU253784 lncRNA downstream 79296 2071708 ~ 2087653 (+) True G223733
TU253737 lncRNA downstream 106128 2098540 ~ 2104299 (+) True G223694
TU253824 lncRNA downstream 170440 2162852 ~ 2163120 (+) True G223770
CI01000052_01929151_01946893.mRNA mRNA upstream 39259 1929151 ~ 1947172 (+) True CI01000052_01929151_01946893
CI01000052_01925657_01927599.mRNA mRNA upstream 58650 1925657 ~ 1927781 (+) True CI01000052_01925657_01927599
CI01000052_01896445_01921839.mRNA mRNA upstream 64462 1894819 ~ 1921969 (+) True CI01000052_01896445_01921839
CI01000052_01887034_01894583.mRNA mRNA upstream 91848 1886982 ~ 1894583 (+) True CI01000052_01887034_01894583
CI01000052_01863516_01880476.mRNA mRNA upstream 105449 1863138 ~ 1880982 (+) True CI01000052_01863516_01880476
CI01000052_02030095_02036209.mRNA mRNA downstream 37457 2029869 ~ 2036635 (+) True CI01000052_02030095_02036209
CI01000052_02040372_02042933.mRNA mRNA downstream 47960 2040372 ~ 2043241 (+) True CI01000052_02040372_02042933
CI01000052_02077422_02080093.mRNA mRNA downstream 85010 2077422 ~ 2080335 (+) True CI01000052_02077422_02080093
CI01000052_02120654_02122805.mRNA mRNA downstream 127948 2120360 ~ 2123260 (+) True CI01000052_02120654_02122805
CI01000052_02167466_02172193.mRNA mRNA downstream 174172 2166584 ~ 2173036 (+) True CI01000052_02167466_02172193
TU253572 other upstream 715504 1270492 ~ 1270927 (+) True G223545
TU253739 other downstream 56914 2049326 ~ 2104299 (+) False G223694
TU253734 other downstream 106128 2098540 ~ 2104299 (+) False G223694
TU255127 other downstream 1438724 3431136 ~ 3460136 (+) True G224953

Expression Profile