RNA id: TU253737



Basic Information


Item Value
RNA id TU253737
length 5067
lncRNA type antisense_over
GC content 0.39
exon number 6
gene id G223694
representative True

Chromosome Information


Item Value
chromosome id CI01000052
NCBI id null
chromosome length 3494004
location 2049326 ~ 2104299 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TCGCTTCCTGTCCTCAGAGTTGGCCGGAACTCATTTATCCGTCATGGGGAAAAGACGAGTGGGATAAACGCTTAATCGGTTTTATAATGTATTGTGAATCATATAAAAACTCATGTTTTATCTAGAGAACACGTATATCGACTATTTTGCTTAATTTTTTAAGTGTTTTGTTAAGTAATGGTGTGAACCGAAGGACTATTGCTCTGAGAGGATGAAACCGCTGAATGTCTCGCGGATTAATATGACGCGAGTTGTTTATCTTACGATTTTTATTTTTTAATTACGCCAAAATAAAAATTTCTTTGCGCAGATTGAATGCAAAGGGTCACATGGTATTCATGATTTAATTTGCATTCTGTTGAATCTTTGCTGTGGGTATAAATGTAGCATTATACCTTATACTATAGTGCATGCTATCGTCCTGTGATTAATATGTATGCTTTTTCGATTTTGAATGTAAATTTTAATTCTATAATTAGTCTAACTCTTTTACTTATTTTAGCATTCTCTCGTTAAGTATCAAAGACGGCACAACATTTTTACAGGGGGGAAAAAAAAACAACATATATTTGAATGCCAAAAGTCCCCCTGAACTGTACAAGAGAATTTTTAGTACTTTCCTCATAAGCAGTTTTGGCAGTTTTTTTTTTTTTTTTTTTTTTTTTTATGATCTTGTTTACAAATTTATTGAGTAAACGCAATGCAGCAAACAAATAAAAATTACATAAATAAGTGGAAAGTGGAACATTAAATTAATAATATTAATATCATTTACACCAGGCAAATGATTTCACAATACACCAAAATCTGGGCTTAATAACATCTCAACATTAGCTCTAAGGCTAAAAATAAACCTTTGCTTTGAAAAACATCTGAGTGGGGTCAACACAGAGAATGGATGCTTTGTTGACAACAAATGCATTTAGGCTACAATATTCCTGTGGTGACTCCACTTGTACATTTACAAACACAAAGTTAATTCCTCGAGTTAGACTGGCATAGCCTCATTGCTGTTTTATAGAACAAGATTATAGTTTCTCTTAATGTGCTGTTAAGAAACTCATCATGACCAAAGCAGTTATATAGTAAGCTGAAATGATAAATTATAAGACCACGTTAAAGCTGACAATGAGACAAATATGCCTAACATCCCGTTTCATGTGCCTATGATAATTTCAGTGTTAAAACTGTTCTTCTCCTATAACAGTTAAAGTAAAAGTCCCCAAAACAGGACTTAAAATTTAATACATTCTGTCTGTGTCTTCCTCACTACAATTTACACAGAAGAGAAATGGTTTCCCTAAAAAAAAGGGCTCTGTCATCAGGTTAGGATGTTGGACGTCTTCACTGTGCTGAGCGACTACACGTCTCGGCATTTCAGGAGGTCGTACTTCACATAACCGACTCGGTCAACCTGCTTTTTGGCATTCATTCTCCAGTAGAAACTCTCCCGGCAGAAGTAAAAGAATCCTGCAAAATATCAAAAAATAGAACATTTAATTTGCTTGATTAGATAAATCAGAGTAGTTAATCAGACTTTTAAAAATTAATTTGAACATAATCTCCCTTACCCTTGTAGAGGAACACATCATGTGAATCGATGGGCACTCCACCAAAAGCTGAGTCAGTGAGTCGAGGGTATCCTGTGTCAATCATCTGAGCCTTCACATCGAGTCTGTGACAAGAAATAAGAGATAAGACAATACTGTGAAAAACTACAATTATCATTATTATCATTAAATTATAATTTCCCATTGTTAGCTCAATGCTATAAACTTATTAGTTACAGTCTTGAAGCAAAGTTACTTACCTCCAGAAGTTCTCTCCTTTAAACAGGAGCACCTTGCCTTTTCCTCTCTGCACAGCTCCCTCCACTCTGTCCAAGTCGATTGGTAGGCCGAGCTTCTCGATTTTACGTGGTCCAAGCACATCATTTCCAGTATAAACCCAGAACTGTTTACCTGTACATATGAAATACAGTACTGTTATATATCTGAACTTCAACCTATTCTGCAATAATGGCAAAATATCTCAATCTGATAAATAAGTACCTGCAAAGAAGTAGATCTTTTTGGTGAGTTGGTCCTCAAAGGCACTGTTAATGATGGCTGGCAGGGCAGGCCACTTCTCAGAGATCAAGAAAGGGCCTTTGCGCTCTCCTTTGCTTGAGATCTTCCAGTAGTGCCATTCTTGAAGAAGTAAAGCTCTTTCTGGATTTCAGTGATGGTATCAAATTCCTTGATTTGGCAGGCATCCTGTGATGGGACTACATCTGTTGTGGTGGAAACAGTGGTTGTTTTCTCACTTGGGGTGGGTTTAGTTGGCCCAATCGGAGAGGAAGTGGTGGTCTTTGGTTTTGGAGGAGTGGGGTCAGGGCCAGTTTTAGGTCCTGAAAAGAAAAAATGAATAAAAATATAGATATAAAACCAGAATTGTATATGACTCTTCAGTTTCAAGATAAAAATTCTTGAATTTTGAATAAGAACATGCATAGTAAAGTAAACAATCAGAGAATGATGGATTATTTAAGTGGGTAAATACCATAGAGATACTGAATGCCTGCAATATCATCCTGATTCAAGGAGAAATCCTCTATATATTTGTACATGGGAAACATCAGAGCGTCTTTGACGTTGGAGTGATCCAAACCAAGTGCATGTCCAAACTCATGAGCAGCCACCAGAAACAGACTGTATCCCTATCAGGGCAAAATCCCCATTTTTTATCTGTGTCATAGTTGCTGGTAGTTCCACACCAGAGTTTTCCATCACTACGGCCTTCACTGGTGCAGGAAGTGTATGACTGTCCCAGGAAGATGAAAGGAAACTGGCATGGCTCTCCTTCTGAATTTCCACCAATCACAGCTGTATCTGTGAGGGGAAAATATATCATAAAAGATTTAATATATTAATATTAAATATGAATTTACATGTATATATCTATCTATCTATTTTAGATAAATAGATATATGGTGTGCTTGTGAAAAATAATATCTGATTGTGAGCTGCTGAGACTTTGAGAACATATTATTCTTTCATATTTTCAATATGTATCTTACTCCATCAAAGTTTCAGGGTTGAGTCTGAAGATATATGAGCTGCTCACCTCTGTTAGGACAGAATCCATACTTTTTATCAGTGTCAAAGTTAGCTGTGGTGGCACACCAGCGATACCCATCAGATCGTCCATCGGTGGTGCATGAGTTATATTTTACCCCCTGAAACACGAAGGGGAAAACACATGGTGCTTCATTGCTGTTCCCATCAAACGTGAAGAGAACTGTGGGAAAACAGAGACGGAATGTTAGACATGCTCATAAAAATAAACACTTGTGCTTGTTGAAATACTGTCACAATAATTCCACATAAGGAGTCAGCTGAAATGTCTGTTTTGGAATTAAAGCCCCATAAAATCATTACTGGAACACTTACGCTCACTGGGACAGAAGCCATATTTCTTGTCCTTGTCGTAGTCTGCAGTGGTTGCGCACCAGGGGAGACCATCTTCACGTCCCTCAGTGGTGCAGGAAGAGTAGGATGTTCCCTCAAACAGGAAGGGGAAGTGACACAGTGCACCCTCTGCATTACCATAGCGGGTTTGAATGGCTGAAGGAGACACATCAATGTCATTGTCTACTCCACAAATTTATATATAAATTAAATATATAGGCATAAACATGACGATCCCCTTGTGAGGGACCAAAGCTTTATTTATTTTTAAGGACTCAATACTATATATGAGAAATACTAAGTGTGATATTATATAGACAATATGTTTCCAATATTAAGTAATCTGCTTTTTTATGGTTATTGGATGGAACCCAAAGCAAATATTTTAAATATTATCCCAGTTTGACAACCCTTGTTTCAGGACACACTCTAACTGTCACTATACACTCAAAACTGTAGAGGGAGCTATTGTTCCACTATGCGCCCTGTATGAAACCGTATGATGAGCGTATTATACTACATGAAATAAAACTATTTATAGGGTGAATTCAGGGCAATTGGGACACTTTTTGCCATTGAGATGACTTGGAAAAGTGTCCCAATCAACCTGAATTCACACTATATCAAAGCAACTGCTATTCATACAATGAAATTGGGGTGTATTGAAATACAAATAAAATACACTCACCTGGTCCAGATCCAAGGGTCCAGTATTCATCATCATCAAAATGGGCATCTCCTTGTATTCCCTGACCTGGAGGGTAGGCGTGAGCCAGCAGCCCATCTTTCCCATCAAAAGGGTAGGGATCTCCGTGATCCTGCTCTCCCAAAGGAGATCATGATGTCAGCAGTGCCGTCATAGAGGCGCGTGAACGTCAGAGGGGTAACGTCACTCCAGACTTTGAAAGCTCTGGCAAAGGCGTCATCGATCAAAGAGGATTCCATGTCTGGTGAGTAGTTCAAAATCCTGCAAGTCAAAACAATGCAATAGATTACATCATGTTCATCACAAACATATGAGATAAAAATGTTGTAGTCAAAGGTTTGGTGCAGATAATTTCTCACCTGTATGTAACTTCACTGTGATCCCACTTCAGGTCTCCATCGAAAGTCTGATAGTTGCGGATGTCTGGGACCCCACAGCGAGGCTGCTTCATTGCATCAATCGTGGGCTGGTCAAGTGACCCTGTCTCCTCCAGCCCGAGCTGCCGCTGGAGCTCCTTCAGAGCTTTAGAAGGGGACACGACTGCCTGCAGTCCGCTCTTCTGGAGAACATCTATGTAGCCATAACGCTTCAGGTACTCCTGCCAGCTGTATGTCTGTCATGTTCTTGATCACATCTCCAGGGAAAGTCACATACACAGATTTGAGCGGCACACACCAAGCCCCTAAAGAGCAGGTTCCAAGAACCAGAAACGCCACAACTCCAAGTCTCATGTTTAGAGTTTCAAGTCAAAACTTGAAAGAAAAAAGTAAAGTTCGATAAGAAAACAGACTCTAGAAATACTAGAAAAAGTCTTCCAGGGAGACGAAGTGCAAGCAGTCTTGTTCTTTCTTCTCCTGCTGATTTGTCTTTTCTTGTGCCCTGAAGGCAGTATTTATGTGCACCTCAGAGATT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU253784 lncRNA upstream 10887 2071708 ~ 2087653 (+) True G223733
TU253769 lncRNA upstream 94861 2003427 ~ 2003679 (+) True G223718
TU253765 lncRNA upstream 98632 1999666 ~ 1999908 (+) True G223714
TU253726 lncRNA upstream 98995 1980453 ~ 1999545 (+) False G223691
TU253824 lncRNA downstream 58553 2162852 ~ 2163120 (+) True G223770
TU253827 lncRNA downstream 70728 2175027 ~ 2175807 (+) True G223773
TU253829 lncRNA downstream 77285 2181584 ~ 2181793 (+) True G223775
TU253889 lncRNA downstream 158495 2262794 ~ 2288556 (+) True G223825
TU253893 lncRNA downstream 190659 2294958 ~ 2295310 (+) True G223828
CI01000052_02077422_02080093.mRNA mRNA upstream 18205 2077422 ~ 2080335 (+) True CI01000052_02077422_02080093
CI01000052_02040372_02042933.mRNA mRNA upstream 55299 2040372 ~ 2043241 (+) True CI01000052_02040372_02042933
CI01000052_02030095_02036209.mRNA mRNA upstream 61905 2029869 ~ 2036635 (+) True CI01000052_02030095_02036209
CI01000052_01929151_01946893.mRNA mRNA upstream 151368 1929151 ~ 1947172 (+) True CI01000052_01929151_01946893
CI01000052_01925657_01927599.mRNA mRNA upstream 170759 1925657 ~ 1927781 (+) True CI01000052_01925657_01927599
CI01000052_02120654_02122805.mRNA mRNA downstream 16061 2120360 ~ 2123260 (+) True CI01000052_02120654_02122805
CI01000052_02167466_02172193.mRNA mRNA downstream 62285 2166584 ~ 2173036 (+) True CI01000052_02167466_02172193
CI01000052_02182830_02186951.mRNA mRNA downstream 77641 2181940 ~ 2187178 (+) True CI01000052_02182830_02186951
CI01000052_02310477_02312424.mRNA mRNA downstream 205580 2309879 ~ 2312907 (+) True CI01000052_02310477_02312424
CI01000052_02374792_02389760.mRNA mRNA downstream 270413 2374712 ~ 2390103 (+) False CI01000052_02374792_02389760
TU253572 other upstream 827613 1270492 ~ 1270927 (+) True G223545
TU255127 other downstream 1326837 3431136 ~ 3460136 (+) True G224953

Expression Profile